Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC16.53■□□□□ 0.24
HLA-DOAP06340 AL139424.3-202ENST00000641619 917 ntBASIC16.53■□□□□ 0.24
HLA-DOAP06340 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DOAP06340 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DOAP06340 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HLA-DOAP06340 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DOAP06340 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DOAP06340 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.53■□□□□ 0.24
HLA-DOAP06340 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DOAP06340 AC061965.1-201ENST00000560524 1465 ntBASIC16.53■□□□□ 0.24
HLA-DOAP06340 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
HLA-DOAP06340 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DOAP06340 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HLA-DOAP06340 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DOAP06340 AC117503.4-201ENST00000623229 1418 ntBASIC16.53■□□□□ 0.24
HLA-DOAP06340 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DOAP06340 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HLA-DOAP06340 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
HLA-DOAP06340 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HLA-DOAP06340 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HLA-DOAP06340 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC16.52■□□□□ 0.24
HLA-DOAP06340 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC16.52■□□□□ 0.24
HLA-DOAP06340 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC16.52■□□□□ 0.24
HLA-DOAP06340 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.52■□□□□ 0.24
HLA-DOAP06340 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC16.52■□□□□ 0.24
HLA-DOAP06340 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 USP3-204ENST00000540797 5474 ntTSL 2 BASIC16.52■□□□□ 0.24
HLA-DOAP06340 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 DKKL1P1-201ENST00000400550 698 ntBASIC16.52■□□□□ 0.24
HLA-DOAP06340 EEF1DP2-201ENST00000433698 843 ntBASIC16.52■□□□□ 0.24
HLA-DOAP06340 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 REEP5-205ENST00000504247 480 ntTSL 5 BASIC16.52■□□□□ 0.24
HLA-DOAP06340 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC16.52■□□□□ 0.24
HLA-DOAP06340 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
HLA-DOAP06340 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC16.52■□□□□ 0.24
HLA-DOAP06340 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DOAP06340 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.23
HLA-DOAP06340 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
HLA-DOAP06340 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC16.52■□□□□ 0.23
HLA-DOAP06340 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HLA-DOAP06340 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HLA-DOAP06340 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HLA-DOAP06340 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HLA-DOAP06340 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC16.52■□□□□ 0.23
HLA-DOAP06340 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
HLA-DOAP06340 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HLA-DOAP06340 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC16.52■□□□□ 0.23
HLA-DOAP06340 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 PES1P2-201ENST00000449745 1735 ntBASIC16.51■□□□□ 0.23
HLA-DOAP06340 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 AC093909.3-201ENST00000504783 336 ntBASIC16.51■□□□□ 0.23
HLA-DOAP06340 AC093826.1-201ENST00000508655 993 ntBASIC16.51■□□□□ 0.23
HLA-DOAP06340 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 AC013553.1-201ENST00000560906 267 ntBASIC16.51■□□□□ 0.23
HLA-DOAP06340 C2orf69P1-201ENST00000563532 1093 ntBASIC16.51■□□□□ 0.23
HLA-DOAP06340 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 TRMT112P3-201ENST00000580149 358 ntBASIC16.51■□□□□ 0.23
HLA-DOAP06340 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 NAMA-206ENST00000605377 509 ntTSL 5 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DOAP06340 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC16.51■□□□□ 0.23
HLA-DOAP06340 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms