RNA–Protein interactions for RNA: ENST00000309828.4

EIF3F-201, Transcript of eukaryotic translation initiation factor 3 subunit F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EIF3F, Length 1,254 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3F-201ENST00000309828 NISCHQ9Y2I1 1504 aa32.29■■■□□ 2.76
EIF3F-201ENST00000309828 CCDC180Q9P1Z9 1646 aa28.29■■■□□ 2.12
EIF3F-201ENST00000309828 ZCCHC6Q5VYS8 1495 aaKnown RBP27.12■■□□□ 1.93
EIF3F-201ENST00000309828 DCAF1Q9Y4B6 1507 aa26.8■■□□□ 1.88
EIF3F-201ENST00000309828 ABCC9O60706 1549 aa26.68■■□□□ 1.86
EIF3F-201ENST00000309828 MYO15BQ96JP2 1530 aa26.55■■□□□ 1.84
EIF3F-201ENST00000309828 DCAF8L2P0C7V8 631 aa26.53■■□□□ 1.84
EIF3F-201ENST00000309828 NACADO15069 1562 aa26.37■■□□□ 1.81
EIF3F-201ENST00000309828 RB1CC1Q8TDY2 1594 aa26.14■■□□□ 1.78
EIF3F-201ENST00000309828 SHROOM4Q9ULL8 1493 aa26.07■■□□□ 1.76
EIF3F-201ENST00000309828 SCRIBQ14160 1630 aa25.85■■□□□ 1.73
EIF3F-201ENST00000309828 UNC13AQ9UPW8 1703 aa25.51■■□□□ 1.68
EIF3F-201ENST00000309828 BICRAQ9NZM4 1560 aa25.29■■□□□ 1.64
EIF3F-201ENST00000309828 PABPN1Q86U42 306 aaKnown RBP eCLIP25.09■■□□□ 1.61
EIF3F-201ENST00000309828 SUPT5HO00267 1087 aaKnown RBP25.05■■□□□ 1.6
EIF3F-201ENST00000309828 CECR2Q9BXF3 1484 aa25.01■■□□□ 1.59
EIF3F-201ENST00000309828 BAZ1AQ9NRL2 1556 aaPredicted RBP24.97■■□□□ 1.59
EIF3F-201ENST00000309828 RSF1Q96T23 1441 aaPredicted RBP24.97■■□□□ 1.59
EIF3F-201ENST00000309828 MROH2BQ7Z745 1585 aa24.88■■□□□ 1.57
EIF3F-201ENST00000309828 SMARCA4P51532 1647 aa24.84■■□□□ 1.57
EIF3F-201ENST00000309828 DNAJC5BQ9UF47 199 aa24.81■■□□□ 1.56
EIF3F-201ENST00000309828 WIZO95785 1651 aa24.66■■□□□ 1.54
EIF3F-201ENST00000309828 PEG3Q9GZU2 1588 aa24.61■■□□□ 1.53
EIF3F-201ENST00000309828 EIF4G1Q04637 1599 aaKnown RBP24.55■■□□□ 1.52
EIF3F-201ENST00000309828 SMARCA2P51531 1590 aa24.5■■□□□ 1.51
EIF3F-201ENST00000309828 TOP2AP11388 1531 aaKnown RBP24.49■■□□□ 1.51
EIF3F-201ENST00000309828 ATAD2BQ9ULI0 1458 aa24.45■■□□□ 1.51
EIF3F-201ENST00000309828 BAZ1BQ9UIG0 1483 aaKnown RBP24.32■■□□□ 1.48
EIF3F-201ENST00000309828 NCAPD3P42695 1498 aa24.31■■□□□ 1.48
EIF3F-201ENST00000309828 HMGXB3Q12766 1538 aa24.29■■□□□ 1.48
EIF3F-201ENST00000309828 CC2D2AQ9P2K1 1620 aa24.2■■□□□ 1.46
EIF3F-201ENST00000309828 CCDC88BA6NC98 1476 aa24.19■■□□□ 1.46
EIF3F-201ENST00000309828 CHIC1Q5VXU3 224 aa23.99■■□□□ 1.43
EIF3F-201ENST00000309828 CFTRP13569 1480 aa23.72■■□□□ 1.39
EIF3F-201ENST00000309828 CADPSQ9ULU8 1353 aa23.65■■□□□ 1.38
EIF3F-201ENST00000309828 TRIM41Q8WV44 630 aa23.65■■□□□ 1.38
EIF3F-201ENST00000309828 PRDM2Q13029 1718 aa23.62■■□□□ 1.37
EIF3F-201ENST00000309828 ABCC8Q09428 1581 aa23.57■■□□□ 1.36
EIF3F-201ENST00000309828 WRNQ14191 1432 aaPredicted RBP eCLIP23.52■■□□□ 1.36
EIF3F-201ENST00000309828 LAMC3Q9Y6N6 1575 aa23.51■■□□□ 1.35
EIF3F-201ENST00000309828 SYNJ1O43426 1573 aa23.4■■□□□ 1.34
EIF3F-201ENST00000309828 NESP48681 1621 aa23.37■■□□□ 1.33
EIF3F-201ENST00000309828 TOP2BQ02880 1626 aa23.37■■□□□ 1.33
EIF3F-201ENST00000309828 FANCD2Q9BXW9 1451 aa23.36■■□□□ 1.33
EIF3F-201ENST00000309828 BIVM-ERCC5R4GMW8 1640 aa23.36■■□□□ 1.33
EIF3F-201ENST00000309828 PDS5BQ9NTI5 1447 aa23.33■■□□□ 1.32
EIF3F-201ENST00000309828 CUX1P39880 1505 aa23.29■■□□□ 1.32
EIF3F-201ENST00000309828 CEP164Q9UPV0 1460 aa23.25■■□□□ 1.31
EIF3F-201ENST00000309828 EEA1Q15075 1411 aa23.23■■□□□ 1.31
EIF3F-201ENST00000309828 DNMBPQ6XZF7 1577 aa23.18■■□□□ 1.3
EIF3F-201ENST00000309828 KIF21AQ7Z4S6 1674 aa23.13■■□□□ 1.29
EIF3F-201ENST00000309828 SOGA1O94964 1423 aa23.12■■□□□ 1.29
EIF3F-201ENST00000309828 TOPBP1Q92547 1522 aa23.11■■□□□ 1.29
EIF3F-201ENST00000309828 FAM9AQ8IZU1 332 aaPredicted RBP23.09■■□□□ 1.29
EIF3F-201ENST00000309828 FGD5Q6ZNL6 1462 aa23.06■■□□□ 1.28
EIF3F-201ENST00000309828 URB2Q14146 1524 aaKnown RBP23.06■■□□□ 1.28
EIF3F-201ENST00000309828 MRC2Q9UBG0 1479 aa23.02■■□□□ 1.28
EIF3F-201ENST00000309828 RUSC2Q8N2Y8 1516 aa23.02■■□□□ 1.28
EIF3F-201ENST00000309828 CSRNP3Q8WYN3 585 aa23■■□□□ 1.27
EIF3F-201ENST00000309828 DNAJC5Q9H3Z4 198 aa22.98■■□□□ 1.27
EIF3F-201ENST00000309828 LOC105371045A0A1W2PR82 267 aa22.97■■□□□ 1.27
EIF3F-201ENST00000309828 KIF27Q86VH2 1401 aa22.97■■□□□ 1.27
EIF3F-201ENST00000309828 POLA1P09884 1462 aaPredicted RBP22.97■■□□□ 1.27
EIF3F-201ENST00000309828 ERCC6Q03468 1493 aa22.93■■□□□ 1.26
EIF3F-201ENST00000309828 WDR62O43379 1518 aa22.91■■□□□ 1.26
EIF3F-201ENST00000309828 ABCA10Q8WWZ4 1543 aa22.9■■□□□ 1.26
EIF3F-201ENST00000309828 CUX2O14529 1486 aa22.88■■□□□ 1.25
EIF3F-201ENST00000309828 KIF21BO75037 1637 aa22.88■■□□□ 1.25
EIF3F-201ENST00000309828 RAD54L2Q9Y4B4 1467 aa22.85■■□□□ 1.25
EIF3F-201ENST00000309828 THOC2Q8NI27 1593 aaKnown RBP22.84■■□□□ 1.25
EIF3F-201ENST00000309828 WDR97A6NE52 1622 aa22.83■■□□□ 1.25
EIF3F-201ENST00000309828 GOLGA3Q08378 1498 aa22.83■■□□□ 1.25
EIF3F-201ENST00000309828 PRXQ9BXM0 1461 aa22.78■■□□□ 1.24
EIF3F-201ENST00000309828 TARBP1Q13395 1621 aaKnown RBP22.77■■□□□ 1.24
EIF3F-201ENST00000309828 ERICH3Q5RHP9 1530 aa22.77■■□□□ 1.24
EIF3F-201ENST00000309828 IGF1RP08069 1367 aa22.74■■□□□ 1.23
EIF3F-201ENST00000309828 TNIKQ9UKE5 1360 aa22.74■■□□□ 1.23
EIF3F-201ENST00000309828 IFT140Q96RY7 1462 aa22.73■■□□□ 1.23
EIF3F-201ENST00000309828 ABCA5Q8WWZ7 1642 aa22.71■■□□□ 1.23
EIF3F-201ENST00000309828 EHMT2Q96KQ7 1210 aa22.68■■□□□ 1.22
EIF3F-201ENST00000309828 RAPGEF2Q9Y4G8 1499 aa22.67■■□□□ 1.22
EIF3F-201ENST00000309828 GAPVD1Q14C86 1478 aa22.66■■□□□ 1.22
EIF3F-201ENST00000309828 UBTFP17480 764 aaKnown RBP22.64■■□□□ 1.21
EIF3F-201ENST00000309828 CUL7Q14999 1698 aa22.64■■□□□ 1.21
EIF3F-201ENST00000309828 CARMIL1Q5VZK9 1371 aa22.63■■□□□ 1.21
EIF3F-201ENST00000309828 TDRD9Q8NDG6 1382 aaKnown RBP22.63■■□□□ 1.21
EIF3F-201ENST00000309828 CEP162Q5TB80 1403 aa22.55■■□□□ 1.2
EIF3F-201ENST00000309828 PBRM1Q86U86 1689 aa22.53■■□□□ 1.2
EIF3F-201ENST00000309828 GRIN2BQ13224 1484 aa22.53■■□□□ 1.2
EIF3F-201ENST00000309828 AQRO60306 1485 aaKnown RBP eCLIP22.51■■□□□ 1.199e-7■■■■■ 31.2
EIF3F-201ENST00000309828 ZNF608Q9ULD9 1512 aaPredicted RBP22.5■■□□□ 1.19
EIF3F-201ENST00000309828 EIF4G3O43432 1585 aaKnown RBP22.48■■□□□ 1.19
EIF3F-201ENST00000309828 FHAD1B1AJZ9 1412 aa22.44■■□□□ 1.18
EIF3F-201ENST00000309828 ADAMTS12P58397 1594 aa22.43■■□□□ 1.18
EIF3F-201ENST00000309828 CLIP1P30622 1438 aa22.42■■□□□ 1.18
EIF3F-201ENST00000309828 MAGI1Q96QZ7 1491 aaPredicted RBP22.37■■□□□ 1.17
EIF3F-201ENST00000309828 SNAPC4Q5SXM2 1469 aa22.34■■□□□ 1.17
EIF3F-201ENST00000309828 CTTNBP2Q8WZ74 1663 aa22.33■■□□□ 1.16
EIF3F-201ENST00000309828 SYNJ2O15056 1496 aa22.27■■□□□ 1.16
EIF3F-201ENST00000309828 VPS8Q8N3P4 1428 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms