Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 CDCA7L-202ENST00000373934 1830 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 DNAJB8-202ENST00000469083 3365 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 FAM204A-202ENST00000369172 872 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
USH2AO75445 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 TRAIP-202ENST00000469027 1145 ntTSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 AC005154.1-202ENST00000578293 999 ntTSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 SMIM17-201ENST00000598409 1076 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 Metazoa_SRP.47-201ENST00000616942 279 ntBASIC6.12□□□□□ -1.43
USH2AO75445 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
USH2AO75445 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC6.12□□□□□ -1.43
USH2AO75445 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 ANAPC15-201ENST00000227618 886 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 MIR197-201ENST00000384976 75 ntBASIC6.12□□□□□ -1.43
USH2AO75445 RSPH1-202ENST00000398352 937 ntTSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 EEF1GP1-201ENST00000457231 1299 ntBASIC6.12□□□□□ -1.43
USH2AO75445 SNORA47-201ENST00000458862 138 ntBASIC6.12□□□□□ -1.43
USH2AO75445 FLNC-AS1-201ENST00000469965 559 ntTSL 4 BASIC6.12□□□□□ -1.43
USH2AO75445 SPG20-AS1-203ENST00000493739 566 ntTSL 3 BASIC6.12□□□□□ -1.43
USH2AO75445 SPATA24-204ENST00000507779 606 ntTSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 SSSCA1-203ENST00000526877 713 ntTSL 3 BASIC6.12□□□□□ -1.43
USH2AO75445 OR52P2P-201ENST00000527287 955 ntBASIC6.12□□□□□ -1.43
USH2AO75445 AC013472.3-201ENST00000607407 659 ntBASIC6.12□□□□□ -1.43
USH2AO75445 MIR7847-201ENST00000610912 103 ntBASIC6.12□□□□□ -1.43
USH2AO75445 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
USH2AO75445 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.43
USH2AO75445 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
USH2AO75445 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC6.11□□□□□ -1.43
USH2AO75445 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 CDC20P1-201ENST00000488829 1500 ntBASIC6.11□□□□□ -1.43
USH2AO75445 USP8-219ENST00000625664 1568 ntTSL 5 BASIC6.11□□□□□ -1.43
USH2AO75445 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
USH2AO75445 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
USH2AO75445 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
USH2AO75445 TAC3-205ENST00000415231 588 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
USH2AO75445 B3GALNT1-204ENST00000417187 1107 ntTSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 SWI5-204ENST00000419867 1048 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 SNAP25-AS1-202ENST00000426491 804 ntTSL 5 BASIC6.11□□□□□ -1.43
USH2AO75445 AC079250.1-201ENST00000456046 531 ntBASIC6.11□□□□□ -1.43
USH2AO75445 NUP210P2-201ENST00000510577 282 ntBASIC6.11□□□□□ -1.43
USH2AO75445 HIST1H2APS4-202ENST00000635537 681 ntBASIC6.11□□□□□ -1.43
USH2AO75445 TEAD1-207ENST00000638666 1281 ntAPPRIS P2 TSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 PEX11B-203ENST00000537888 1632 ntTSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 AC026471.1-201ENST00000564629 3026 ntBASIC6.11□□□□□ -1.43
USH2AO75445 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 TPM3P7-201ENST00000338274 732 ntBASIC6.11□□□□□ -1.43
USH2AO75445 CMTM1-206ENST00000457188 765 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 CMC2-202ENST00000486645 766 ntTSL 3 BASIC6.11□□□□□ -1.43
USH2AO75445 CMTM1-215ENST00000531885 590 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 AL512310.5-201ENST00000551999 515 ntBASIC6.11□□□□□ -1.43
USH2AO75445 SIGLEC17P-201ENST00000593736 484 ntBASIC6.11□□□□□ -1.43
USH2AO75445 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 TUBB4AP1-201ENST00000450755 1325 ntBASIC6.11□□□□□ -1.43
USH2AO75445 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC6.11□□□□□ -1.43
USH2AO75445 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USH2AO75445 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC6.11□□□□□ -1.43
USH2AO75445 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms