Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 SNORA50C-201ENST00000408535 133 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 SNORD23-201ENST00000408876 110 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 RBPMSLP-201ENST00000433427 502 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 CDKN2A-AS1-201ENST00000441769 823 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 AP000533.1-201ENST00000456143 1177 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 AP001462.1-201ENST00000594089 452 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 SNORA50.1-201ENST00000628590 135 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 AC034205.3-201ENST00000603595 1376 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 AL359092.2-201ENST00000423330 585 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 HLA-W-207ENST00000439514 771 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 OR52V1P-201ENST00000515557 898 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 DERL2-206ENST00000572834 589 ntTSL 3 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 NAT9-219ENST00000582524 573 ntTSL 4 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 AC021321.1-201ENST00000607397 1113 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 AP000553.2-201ENST00000609038 441 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 SNX20-205ENST00000610485 557 ntTSL 5 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 AC079331.1-201ENST00000623200 1200 ntBASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
SHANK3Q9BYB0 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 AC016397.2-201ENST00000624848 1985 ntBASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 CXXC1P1-202ENST00000489409 1212 ntBASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 SAA2-206ENST00000530400 323 ntTSL 3 BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 AC005865.2-202ENST00000635814 725 ntBASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 TNRC18P2-201ENST00000417666 2714 ntBASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 AC061965.1-201ENST00000560524 1465 ntBASIC17.74■□□□□ 0.43
SHANK3Q9BYB0 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 ERG-211ENST00000453032 1595 ntTSL 2 BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHANK3Q9BYB0 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHANK3Q9BYB0 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 276.1 ms