RNA–Protein interactions for RNA: ENST00000378034.7

CKAP2-202, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CKAP2, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-202ENST00000378034 NISCHQ9Y2I1 1504 aa31.85■■■□□ 2.69
CKAP2-202ENST00000378034 CCDC180Q9P1Z9 1646 aa28.28■■■□□ 2.12
CKAP2-202ENST00000378034 ABCC9O60706 1549 aa27.4■■□□□ 1.98
CKAP2-202ENST00000378034 ZCCHC6Q5VYS8 1495 aaKnown RBP26.57■■□□□ 1.84
CKAP2-202ENST00000378034 NACADO15069 1562 aa26.54■■□□□ 1.84
CKAP2-202ENST00000378034 RB1CC1Q8TDY2 1594 aa26.52■■□□□ 1.84
CKAP2-202ENST00000378034 MYO15BQ96JP2 1530 aa26.47■■□□□ 1.83
CKAP2-202ENST00000378034 DCAF8L2P0C7V8 631 aa26.47■■□□□ 1.83
CKAP2-202ENST00000378034 DCAF1Q9Y4B6 1507 aa26.41■■□□□ 1.82
CKAP2-202ENST00000378034 UNC13AQ9UPW8 1703 aa25.89■■□□□ 1.73
CKAP2-202ENST00000378034 SCRIBQ14160 1630 aa25.74■■□□□ 1.71
CKAP2-202ENST00000378034 BICRAQ9NZM4 1560 aa25.67■■□□□ 1.7
CKAP2-202ENST00000378034 PABPN1Q86U42 306 aaKnown RBP eCLIP25.62■■□□□ 1.69
CKAP2-202ENST00000378034 SHROOM4Q9ULL8 1493 aa25.51■■□□□ 1.67
CKAP2-202ENST00000378034 EIF4G1Q04637 1599 aaKnown RBP24.99■■□□□ 1.59
CKAP2-202ENST00000378034 DNAJC5BQ9UF47 199 aa24.96■■□□□ 1.59
CKAP2-202ENST00000378034 CC2D2AQ9P2K1 1620 aa24.83■■□□□ 1.57
CKAP2-202ENST00000378034 CECR2Q9BXF3 1484 aa24.75■■□□□ 1.55
CKAP2-202ENST00000378034 BAZ1AQ9NRL2 1556 aaPredicted RBP24.69■■□□□ 1.54
CKAP2-202ENST00000378034 SMARCA4P51532 1647 aa24.67■■□□□ 1.54
CKAP2-202ENST00000378034 MROH2BQ7Z745 1585 aa24.52■■□□□ 1.52
CKAP2-202ENST00000378034 SMARCA2P51531 1590 aa24.5■■□□□ 1.51
CKAP2-202ENST00000378034 ATAD2BQ9ULI0 1458 aa24.49■■□□□ 1.51
CKAP2-202ENST00000378034 NCAPD3P42695 1498 aa24.48■■□□□ 1.51
CKAP2-202ENST00000378034 PEG3Q9GZU2 1588 aa24.46■■□□□ 1.51
CKAP2-202ENST00000378034 HMGXB3Q12766 1538 aa24.37■■□□□ 1.49
CKAP2-202ENST00000378034 RSF1Q96T23 1441 aaPredicted RBP24.31■■□□□ 1.48
CKAP2-202ENST00000378034 BAZ1BQ9UIG0 1483 aaKnown RBP24.3■■□□□ 1.48
CKAP2-202ENST00000378034 WIZO95785 1651 aa24.27■■□□□ 1.48
CKAP2-202ENST00000378034 TOP2AP11388 1531 aaKnown RBP24.05■■□□□ 1.44
CKAP2-202ENST00000378034 LAMC3Q9Y6N6 1575 aa23.81■■□□□ 1.4
CKAP2-202ENST00000378034 SUPT5HO00267 1087 aaKnown RBP23.79■■□□□ 1.4
CKAP2-202ENST00000378034 NESP48681 1621 aa23.76■■□□□ 1.39
CKAP2-202ENST00000378034 CADPSQ9ULU8 1353 aa23.76■■□□□ 1.39
CKAP2-202ENST00000378034 CCDC88BA6NC98 1476 aa23.75■■□□□ 1.39
CKAP2-202ENST00000378034 CFTRP13569 1480 aa23.66■■□□□ 1.38
CKAP2-202ENST00000378034 PDS5BQ9NTI5 1447 aa23.64■■□□□ 1.37
CKAP2-202ENST00000378034 ERCC6Q03468 1493 aa23.63■■□□□ 1.37
CKAP2-202ENST00000378034 PRDM2Q13029 1718 aa23.52■■□□□ 1.36
CKAP2-202ENST00000378034 KIF21AQ7Z4S6 1674 aa23.52■■□□□ 1.36
CKAP2-202ENST00000378034 FANCD2Q9BXW9 1451 aa23.47■■□□□ 1.35
CKAP2-202ENST00000378034 CEP164Q9UPV0 1460 aa23.43■■□□□ 1.34
CKAP2-202ENST00000378034 THOC2Q8NI27 1593 aaKnown RBP23.4■■□□□ 1.34
CKAP2-202ENST00000378034 MRC2Q9UBG0 1479 aa23.36■■□□□ 1.33
CKAP2-202ENST00000378034 CUX2O14529 1486 aa23.36■■□□□ 1.33
CKAP2-202ENST00000378034 WDR62O43379 1518 aa23.29■■□□□ 1.32
CKAP2-202ENST00000378034 URB2Q14146 1524 aaKnown RBP23.21■■□□□ 1.31
CKAP2-202ENST00000378034 ABCC8Q09428 1581 aa23.19■■□□□ 1.3
CKAP2-202ENST00000378034 DNMBPQ6XZF7 1577 aa23.13■■□□□ 1.29
CKAP2-202ENST00000378034 TOPBP1Q92547 1522 aa23.12■■□□□ 1.29
CKAP2-202ENST00000378034 CUX1P39880 1505 aa22.99■■□□□ 1.27
CKAP2-202ENST00000378034 IFT140Q96RY7 1462 aa22.95■■□□□ 1.26
CKAP2-202ENST00000378034 WRNQ14191 1432 aaPredicted RBP eCLIP22.93■■□□□ 1.26
CKAP2-202ENST00000378034 POLA1P09884 1462 aaPredicted RBP22.92■■□□□ 1.26
CKAP2-202ENST00000378034 FGD5Q6ZNL6 1462 aa22.9■■□□□ 1.26
CKAP2-202ENST00000378034 TOP2BQ02880 1626 aa22.88■■□□□ 1.25
CKAP2-202ENST00000378034 BIVM-ERCC5R4GMW8 1640 aa22.88■■□□□ 1.25
CKAP2-202ENST00000378034 TARBP1Q13395 1621 aaKnown RBP22.86■■□□□ 1.25
CKAP2-202ENST00000378034 SOGA1O94964 1423 aa22.84■■□□□ 1.25
CKAP2-202ENST00000378034 SYNJ1O43426 1573 aa22.84■■□□□ 1.25
CKAP2-202ENST00000378034 RAD54L2Q9Y4B4 1467 aa22.8■■□□□ 1.24
CKAP2-202ENST00000378034 ZNF608Q9ULD9 1512 aaPredicted RBP22.77■■□□□ 1.24
CKAP2-202ENST00000378034 WDR97A6NE52 1622 aa22.75■■□□□ 1.23
CKAP2-202ENST00000378034 EIF4G3O43432 1585 aaKnown RBP22.72■■□□□ 1.23
CKAP2-202ENST00000378034 ABCA10Q8WWZ4 1543 aa22.71■■□□□ 1.23
CKAP2-202ENST00000378034 AQRO60306 1485 aaKnown RBP eCLIP22.68■■□□□ 1.221e-9■■■■■ 29.8
CKAP2-202ENST00000378034 TDRD9Q8NDG6 1382 aaKnown RBP22.66■■□□□ 1.22
CKAP2-202ENST00000378034 ABCA5Q8WWZ7 1642 aa22.6■■□□□ 1.21
CKAP2-202ENST00000378034 GAPVD1Q14C86 1478 aa22.59■■□□□ 1.21
CKAP2-202ENST00000378034 GRIN2BQ13224 1484 aa22.57■■□□□ 1.2
CKAP2-202ENST00000378034 PBRM1Q86U86 1689 aa22.54■■□□□ 1.2
CKAP2-202ENST00000378034 MAGI1Q96QZ7 1491 aaPredicted RBP22.51■■□□□ 1.19
CKAP2-202ENST00000378034 TRIM41Q8WV44 630 aa22.5■■□□□ 1.19
CKAP2-202ENST00000378034 SNAPC4Q5SXM2 1469 aa22.48■■□□□ 1.19
CKAP2-202ENST00000378034 ERICH3Q5RHP9 1530 aa22.46■■□□□ 1.19
CKAP2-202ENST00000378034 KIF27Q86VH2 1401 aa22.46■■□□□ 1.19
CKAP2-202ENST00000378034 OSCARQ8IYS5 282 aa22.41■■□□□ 1.18
CKAP2-202ENST00000378034 CHD1O14646 1710 aa22.4■■□□□ 1.18
CKAP2-202ENST00000378034 DNAJC5Q9H3Z4 198 aa22.4■■□□□ 1.18
CKAP2-202ENST00000378034 SYNJ2O15056 1496 aa22.4■■□□□ 1.18
CKAP2-202ENST00000378034 CHMP7Q8WUX9 453 aaPredicted RBP22.36■■□□□ 1.17
CKAP2-202ENST00000378034 ADAMTS12P58397 1594 aa22.36■■□□□ 1.17
CKAP2-202ENST00000378034 FBLN2P98095 1184 aa22.36■■□□□ 1.17
CKAP2-202ENST00000378034 FHAD1B1AJZ9 1412 aa22.35■■□□□ 1.17
CKAP2-202ENST00000378034 CHIC1Q5VXU3 224 aa22.33■■□□□ 1.17
CKAP2-202ENST00000378034 IGF1RP08069 1367 aa22.32■■□□□ 1.16
CKAP2-202ENST00000378034 CUL7Q14999 1698 aa22.3■■□□□ 1.16
CKAP2-202ENST00000378034 GRIN2AQ12879 1464 aa22.27■■□□□ 1.16
CKAP2-202ENST00000378034 RUSC2Q8N2Y8 1516 aa22.24■■□□□ 1.15
CKAP2-202ENST00000378034 CARMIL1Q5VZK9 1371 aa22.2■■□□□ 1.14
CKAP2-202ENST00000378034 EEA1Q15075 1411 aa22.18■■□□□ 1.14
CKAP2-202ENST00000378034 CLASP1Q7Z460 1538 aa22.18■■□□□ 1.14
CKAP2-202ENST00000378034 NUP160Q12769 1436 aa22.17■■□□□ 1.14
CKAP2-202ENST00000378034 CEP170Q5SW79 1584 aa22.13■■□□□ 1.13
CKAP2-202ENST00000378034 RAPGEF2Q9Y4G8 1499 aa22.1■■□□□ 1.13
CKAP2-202ENST00000378034 CSRNP3Q8WYN3 585 aa22.08■■□□□ 1.12
CKAP2-202ENST00000378034 PRXQ9BXM0 1461 aa22.06■■□□□ 1.12
CKAP2-202ENST00000378034 ARHGEF11O15085 1522 aa22.03■■□□□ 1.12
CKAP2-202ENST00000378034 KIAA0586Q9BVV6 1533 aa22.02■■□□□ 1.11
CKAP2-202ENST00000378034 RIMBP3CA6NJZ7 1639 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms