RNA–Protein interactions for RNA: ENST00000439514.1

HLA-W-207, Transcript of major histocompatibility complex, class I, W (pseudogene), humanhuman

BASIC

Gene HLA-W, Length 771 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-W-207ENST00000439514 NISCHQ9Y2I1 1504 aa31.96■■■□□ 2.71
HLA-W-207ENST00000439514 CCDC180Q9P1Z9 1646 aa28.54■■■□□ 2.16
HLA-W-207ENST00000439514 ABCC9O60706 1549 aa27.87■■■□□ 2.05
HLA-W-207ENST00000439514 RB1CC1Q8TDY2 1594 aa26.91■■□□□ 1.9
HLA-W-207ENST00000439514 NACADO15069 1562 aa26.87■■□□□ 1.89
HLA-W-207ENST00000439514 MYO15BQ96JP2 1530 aa26.72■■□□□ 1.87
HLA-W-207ENST00000439514 DCAF8L2P0C7V8 631 aa26.67■■□□□ 1.86
HLA-W-207ENST00000439514 ZCCHC6Q5VYS8 1495 aaKnown RBP26.61■■□□□ 1.85
HLA-W-207ENST00000439514 DCAF1Q9Y4B6 1507 aa26.54■■□□□ 1.84
HLA-W-207ENST00000439514 UNC13AQ9UPW8 1703 aa26.14■■□□□ 1.77
HLA-W-207ENST00000439514 PABPN1Q86U42 306 aaKnown RBP eCLIP25.98■■□□□ 1.75
HLA-W-207ENST00000439514 BICRAQ9NZM4 1560 aa25.96■■□□□ 1.75
HLA-W-207ENST00000439514 SHROOM4Q9ULL8 1493 aa25.93■■□□□ 1.74
HLA-W-207ENST00000439514 SCRIBQ14160 1630 aa25.89■■□□□ 1.74
HLA-W-207ENST00000439514 DNAJC5BQ9UF47 199 aa25.57■■□□□ 1.68
HLA-W-207ENST00000439514 EIF4G1Q04637 1599 aaKnown RBP25.35■■□□□ 1.65
HLA-W-207ENST00000439514 CC2D2AQ9P2K1 1620 aa25.24■■□□□ 1.63
HLA-W-207ENST00000439514 CECR2Q9BXF3 1484 aa25.12■■□□□ 1.61
HLA-W-207ENST00000439514 BAZ1AQ9NRL2 1556 aaPredicted RBP24.84■■□□□ 1.57
HLA-W-207ENST00000439514 SMARCA4P51532 1647 aa24.81■■□□□ 1.56
HLA-W-207ENST00000439514 NCAPD3P42695 1498 aa24.76■■□□□ 1.55
HLA-W-207ENST00000439514 SMARCA2P51531 1590 aa24.76■■□□□ 1.55
HLA-W-207ENST00000439514 ATAD2BQ9ULI0 1458 aa24.7■■□□□ 1.55
HLA-W-207ENST00000439514 HMGXB3Q12766 1538 aa24.65■■□□□ 1.54
HLA-W-207ENST00000439514 PEG3Q9GZU2 1588 aa24.63■■□□□ 1.53
HLA-W-207ENST00000439514 MROH2BQ7Z745 1585 aa24.55■■□□□ 1.52
HLA-W-207ENST00000439514 BAZ1BQ9UIG0 1483 aaKnown RBP24.53■■□□□ 1.52
HLA-W-207ENST00000439514 RSF1Q96T23 1441 aaPredicted RBP24.27■■□□□ 1.48
HLA-W-207ENST00000439514 WIZO95785 1651 aa24.27■■□□□ 1.48
HLA-W-207ENST00000439514 LAMC3Q9Y6N6 1575 aa24.14■■□□□ 1.45
HLA-W-207ENST00000439514 ERCC6Q03468 1493 aa24.13■■□□□ 1.45
HLA-W-207ENST00000439514 TOP2AP11388 1531 aaKnown RBP24.11■■□□□ 1.45
HLA-W-207ENST00000439514 NESP48681 1621 aa24.04■■□□□ 1.44
HLA-W-207ENST00000439514 CADPSQ9ULU8 1353 aa24.02■■□□□ 1.44
HLA-W-207ENST00000439514 PDS5BQ9NTI5 1447 aa24.01■■□□□ 1.43
HLA-W-207ENST00000439514 CUX2O14529 1486 aa23.96■■□□□ 1.43
HLA-W-207ENST00000439514 CFTRP13569 1480 aa23.85■■□□□ 1.41
HLA-W-207ENST00000439514 KIF21AQ7Z4S6 1674 aa23.79■■□□□ 1.4
HLA-W-207ENST00000439514 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
HLA-W-207ENST00000439514 CCDC88BA6NC98 1476 aa23.77■■□□□ 1.4
HLA-W-207ENST00000439514 CEP164Q9UPV0 1460 aa23.74■■□□□ 1.39
HLA-W-207ENST00000439514 FANCD2Q9BXW9 1451 aa23.72■■□□□ 1.39
HLA-W-207ENST00000439514 MRC2Q9UBG0 1479 aa23.72■■□□□ 1.39
HLA-W-207ENST00000439514 PRDM2Q13029 1718 aa23.67■■□□□ 1.38
HLA-W-207ENST00000439514 WDR62O43379 1518 aa23.64■■□□□ 1.37
HLA-W-207ENST00000439514 SUPT5HO00267 1087 aaKnown RBP23.53■■□□□ 1.36
HLA-W-207ENST00000439514 ABCC8Q09428 1581 aa23.45■■□□□ 1.34
HLA-W-207ENST00000439514 URB2Q14146 1524 aaKnown RBP23.43■■□□□ 1.34
HLA-W-207ENST00000439514 TOPBP1Q92547 1522 aa23.32■■□□□ 1.32
HLA-W-207ENST00000439514 DNMBPQ6XZF7 1577 aa23.31■■□□□ 1.32
HLA-W-207ENST00000439514 DNAJC5Q9H3Z4 198 aa23.27■■□□□ 1.32
HLA-W-207ENST00000439514 IFT140Q96RY7 1462 aa23.26■■□□□ 1.31
HLA-W-207ENST00000439514 POLA1P09884 1462 aaPredicted RBP23.11■■□□□ 1.29
HLA-W-207ENST00000439514 CUX1P39880 1505 aa23.06■■□□□ 1.28
HLA-W-207ENST00000439514 TARBP1Q13395 1621 aaKnown RBP23.04■■□□□ 1.28
HLA-W-207ENST00000439514 SOGA1O94964 1423 aa23.03■■□□□ 1.28
HLA-W-207ENST00000439514 WDR97A6NE52 1622 aa23.03■■□□□ 1.28
HLA-W-207ENST00000439514 FGD5Q6ZNL6 1462 aa23.03■■□□□ 1.28
HLA-W-207ENST00000439514 ZNF608Q9ULD9 1512 aaPredicted RBP23.03■■□□□ 1.28
HLA-W-207ENST00000439514 EIF4G3O43432 1585 aaKnown RBP22.99■■□□□ 1.27
HLA-W-207ENST00000439514 WRNQ14191 1432 aaPredicted RBP eCLIP22.95■■□□□ 1.26
HLA-W-207ENST00000439514 RAD54L2Q9Y4B4 1467 aa22.94■■□□□ 1.26
HLA-W-207ENST00000439514 OSCARQ8IYS5 282 aa22.92■■□□□ 1.26
HLA-W-207ENST00000439514 AQRO60306 1485 aaKnown RBP eCLIP22.9■■□□□ 1.26
HLA-W-207ENST00000439514 TOP2BQ02880 1626 aa22.9■■□□□ 1.26
HLA-W-207ENST00000439514 BIVM-ERCC5R4GMW8 1640 aa22.89■■□□□ 1.25
HLA-W-207ENST00000439514 ABCA10Q8WWZ4 1543 aa22.86■■□□□ 1.25
HLA-W-207ENST00000439514 TDRD9Q8NDG6 1382 aaKnown RBP22.86■■□□□ 1.25
HLA-W-207ENST00000439514 GRIN2BQ13224 1484 aa22.81■■□□□ 1.24
HLA-W-207ENST00000439514 SYNJ1O43426 1573 aa22.8■■□□□ 1.24
HLA-W-207ENST00000439514 MAGI1Q96QZ7 1491 aaPredicted RBP22.79■■□□□ 1.24
HLA-W-207ENST00000439514 GAPVD1Q14C86 1478 aa22.77■■□□□ 1.24
HLA-W-207ENST00000439514 ABCA5Q8WWZ7 1642 aa22.74■■□□□ 1.23
HLA-W-207ENST00000439514 SNAPC4Q5SXM2 1469 aa22.73■■□□□ 1.23
HLA-W-207ENST00000439514 CHD1O14646 1710 aa22.69■■□□□ 1.22
HLA-W-207ENST00000439514 PBRM1Q86U86 1689 aa22.69■■□□□ 1.22
HLA-W-207ENST00000439514 FBLN2P98095 1184 aa22.68■■□□□ 1.22
HLA-W-207ENST00000439514 SYNJ2O15056 1496 aa22.67■■□□□ 1.22
HLA-W-207ENST00000439514 CHMP7Q8WUX9 453 aaPredicted RBP22.67■■□□□ 1.22
HLA-W-207ENST00000439514 ERICH3Q5RHP9 1530 aa22.61■■□□□ 1.21
HLA-W-207ENST00000439514 FHAD1B1AJZ9 1412 aa22.54■■□□□ 1.2
HLA-W-207ENST00000439514 ADAMTS12P58397 1594 aa22.53■■□□□ 1.2
HLA-W-207ENST00000439514 KIF27Q86VH2 1401 aa22.51■■□□□ 1.19
HLA-W-207ENST00000439514 ARHGEF11O15085 1522 aa22.5■■□□□ 1.19
HLA-W-207ENST00000439514 GRIN2AQ12879 1464 aa22.49■■□□□ 1.19
HLA-W-207ENST00000439514 CLASP1Q7Z460 1538 aa22.49■■□□□ 1.19
HLA-W-207ENST00000439514 RIMBP3CA6NJZ7 1639 aa22.48■■□□□ 1.19
HLA-W-207ENST00000439514 RIMBP3BA6NNM3 1639 aa22.48■■□□□ 1.19
HLA-W-207ENST00000439514 RIMBP3Q9UFD9 1639 aa22.48■■□□□ 1.19
HLA-W-207ENST00000439514 NUP160Q12769 1436 aa22.4■■□□□ 1.18
HLA-W-207ENST00000439514 TRIM41Q8WV44 630 aa22.39■■□□□ 1.17
HLA-W-207ENST00000439514 CUL7Q14999 1698 aa22.39■■□□□ 1.17
HLA-W-207ENST00000439514 IGF1RP08069 1367 aa22.36■■□□□ 1.17
HLA-W-207ENST00000439514 CEP170Q5SW79 1584 aa22.32■■□□□ 1.16
HLA-W-207ENST00000439514 ARAP1Q96P48 1450 aa22.28■■□□□ 1.16
HLA-W-207ENST00000439514 CYB5RLQ6IPT4 315 aa22.27■■□□□ 1.16
HLA-W-207ENST00000439514 CARMIL1Q5VZK9 1371 aa22.25■■□□□ 1.15
HLA-W-207ENST00000439514 SHROOM2Q13796 1616 aa22.23■■□□□ 1.15
HLA-W-207ENST00000439514 RUSC2Q8N2Y8 1516 aa22.2■■□□□ 1.14
HLA-W-207ENST00000439514 KIAA0586Q9BVV6 1533 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms