RNA–Protein interactions for RNA: ENST00000463916.5

XRN1-203, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 1 (best) BASIC

Gene XRN1, Length 2,075 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-203ENST00000463916 NISCHQ9Y2I1 1504 aa31.84■■■□□ 2.69
XRN1-203ENST00000463916 CCDC180Q9P1Z9 1646 aa28.3■■■□□ 2.12
XRN1-203ENST00000463916 ABCC9O60706 1549 aa27.96■■■□□ 2.07
XRN1-203ENST00000463916 DCAF8L2P0C7V8 631 aa26.74■■□□□ 1.87
XRN1-203ENST00000463916 RB1CC1Q8TDY2 1594 aa26.74■■□□□ 1.87
XRN1-203ENST00000463916 NACADO15069 1562 aa26.67■■□□□ 1.86
XRN1-203ENST00000463916 ZCCHC6Q5VYS8 1495 aaKnown RBP26.47■■□□□ 1.83
XRN1-203ENST00000463916 MYO15BQ96JP2 1530 aa26.45■■□□□ 1.82
XRN1-203ENST00000463916 DCAF1Q9Y4B6 1507 aa26.28■■□□□ 1.8
XRN1-203ENST00000463916 UNC13AQ9UPW8 1703 aa26.18■■□□□ 1.78
XRN1-203ENST00000463916 PABPN1Q86U42 306 aaKnown RBP eCLIP26.15■■□□□ 1.78
XRN1-203ENST00000463916 BICRAQ9NZM4 1560 aa26.02■■□□□ 1.76
XRN1-203ENST00000463916 DNAJC5BQ9UF47 199 aa25.91■■□□□ 1.74
XRN1-203ENST00000463916 SCRIBQ14160 1630 aa25.89■■□□□ 1.74
XRN1-203ENST00000463916 SHROOM4Q9ULL8 1493 aa25.6■■□□□ 1.69
XRN1-203ENST00000463916 EIF4G1Q04637 1599 aaKnown RBP25.31■■□□□ 1.64
XRN1-203ENST00000463916 CC2D2AQ9P2K1 1620 aa25.26■■□□□ 1.63
XRN1-203ENST00000463916 CECR2Q9BXF3 1484 aa25.11■■□□□ 1.61
XRN1-203ENST00000463916 SMARCA4P51532 1647 aa24.73■■□□□ 1.55
XRN1-203ENST00000463916 NCAPD3P42695 1498 aa24.66■■□□□ 1.54
XRN1-203ENST00000463916 ATAD2BQ9ULI0 1458 aa24.66■■□□□ 1.54
XRN1-203ENST00000463916 BAZ1AQ9NRL2 1556 aaPredicted RBP24.65■■□□□ 1.54
XRN1-203ENST00000463916 MROH2BQ7Z745 1585 aa24.57■■□□□ 1.52
XRN1-203ENST00000463916 SMARCA2P51531 1590 aa24.56■■□□□ 1.52
XRN1-203ENST00000463916 HMGXB3Q12766 1538 aa24.48■■□□□ 1.51
XRN1-203ENST00000463916 PEG3Q9GZU2 1588 aa24.47■■□□□ 1.51
XRN1-203ENST00000463916 BAZ1BQ9UIG0 1483 aaKnown RBP24.42■■□□□ 1.5
XRN1-203ENST00000463916 WIZO95785 1651 aa24.29■■□□□ 1.48
XRN1-203ENST00000463916 RSF1Q96T23 1441 aaPredicted RBP24.23■■□□□ 1.47
XRN1-203ENST00000463916 NESP48681 1621 aa24.17■■□□□ 1.46
XRN1-203ENST00000463916 ERCC6Q03468 1493 aa24.06■■□□□ 1.44
XRN1-203ENST00000463916 LAMC3Q9Y6N6 1575 aa23.99■■□□□ 1.43
XRN1-203ENST00000463916 TOP2AP11388 1531 aaKnown RBP23.97■■□□□ 1.43
XRN1-203ENST00000463916 CADPSQ9ULU8 1353 aa23.94■■□□□ 1.42
XRN1-203ENST00000463916 PDS5BQ9NTI5 1447 aa23.85■■□□□ 1.41
XRN1-203ENST00000463916 CUX2O14529 1486 aa23.84■■□□□ 1.41
XRN1-203ENST00000463916 KIF21AQ7Z4S6 1674 aa23.83■■□□□ 1.4
XRN1-203ENST00000463916 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
XRN1-203ENST00000463916 CFTRP13569 1480 aa23.76■■□□□ 1.39
XRN1-203ENST00000463916 CCDC88BA6NC98 1476 aa23.74■■□□□ 1.39
XRN1-203ENST00000463916 FANCD2Q9BXW9 1451 aa23.66■■□□□ 1.38
XRN1-203ENST00000463916 MRC2Q9UBG0 1479 aa23.62■■□□□ 1.37
XRN1-203ENST00000463916 CEP164Q9UPV0 1460 aa23.62■■□□□ 1.37
XRN1-203ENST00000463916 WDR62O43379 1518 aa23.55■■□□□ 1.36
XRN1-203ENST00000463916 SUPT5HO00267 1087 aaKnown RBP23.52■■□□□ 1.36
XRN1-203ENST00000463916 PRDM2Q13029 1718 aa23.49■■□□□ 1.35
XRN1-203ENST00000463916 URB2Q14146 1524 aaKnown RBP23.45■■□□□ 1.34
XRN1-203ENST00000463916 DNAJC5Q9H3Z4 198 aa23.39■■□□□ 1.33
XRN1-203ENST00000463916 TOPBP1Q92547 1522 aa23.26■■□□□ 1.31
XRN1-203ENST00000463916 DNMBPQ6XZF7 1577 aa23.19■■□□□ 1.3
XRN1-203ENST00000463916 ABCC8Q09428 1581 aa23.18■■□□□ 1.3
XRN1-203ENST00000463916 IFT140Q96RY7 1462 aa23.12■■□□□ 1.29
XRN1-203ENST00000463916 ZNF608Q9ULD9 1512 aaPredicted RBP23.11■■□□□ 1.29
XRN1-203ENST00000463916 POLA1P09884 1462 aaPredicted RBP23.06■■□□□ 1.28
XRN1-203ENST00000463916 CUX1P39880 1505 aa23.05■■□□□ 1.28
XRN1-203ENST00000463916 TARBP1Q13395 1621 aaKnown RBP23.03■■□□□ 1.28
XRN1-203ENST00000463916 RAD54L2Q9Y4B4 1467 aa23■■□□□ 1.27
XRN1-203ENST00000463916 FGD5Q6ZNL6 1462 aa22.98■■□□□ 1.27
XRN1-203ENST00000463916 SOGA1O94964 1423 aa22.96■■□□□ 1.27
XRN1-203ENST00000463916 AQRO60306 1485 aaKnown RBP eCLIP22.96■■□□□ 1.271e-6■■■□□ 16.6
XRN1-203ENST00000463916 EIF4G3O43432 1585 aaKnown RBP22.96■■□□□ 1.27
XRN1-203ENST00000463916 TDRD9Q8NDG6 1382 aaKnown RBP22.89■■□□□ 1.26
XRN1-203ENST00000463916 OSCARQ8IYS5 282 aa22.88■■□□□ 1.25
XRN1-203ENST00000463916 WRNQ14191 1432 aaPredicted RBP eCLIP22.81■■□□□ 1.24
XRN1-203ENST00000463916 SYNJ1O43426 1573 aa22.79■■□□□ 1.24
XRN1-203ENST00000463916 WDR97A6NE52 1622 aa22.77■■□□□ 1.23
XRN1-203ENST00000463916 TOP2BQ02880 1626 aa22.77■■□□□ 1.23
XRN1-203ENST00000463916 BIVM-ERCC5R4GMW8 1640 aa22.76■■□□□ 1.23
XRN1-203ENST00000463916 ABCA10Q8WWZ4 1543 aa22.73■■□□□ 1.23
XRN1-203ENST00000463916 FBLN2P98095 1184 aa22.71■■□□□ 1.23
XRN1-203ENST00000463916 SNAPC4Q5SXM2 1469 aa22.7■■□□□ 1.22
XRN1-203ENST00000463916 CHD1O14646 1710 aa22.69■■□□□ 1.22
XRN1-203ENST00000463916 GRIN2BQ13224 1484 aa22.69■■□□□ 1.22
XRN1-203ENST00000463916 GAPVD1Q14C86 1478 aa22.69■■□□□ 1.22
XRN1-203ENST00000463916 ABCA5Q8WWZ7 1642 aa22.65■■□□□ 1.22
XRN1-203ENST00000463916 MAGI1Q96QZ7 1491 aaPredicted RBP22.63■■□□□ 1.21
XRN1-203ENST00000463916 PBRM1Q86U86 1689 aa22.61■■□□□ 1.21
XRN1-203ENST00000463916 CHMP7Q8WUX9 453 aaPredicted RBP22.59■■□□□ 1.21
XRN1-203ENST00000463916 SYNJ2O15056 1496 aa22.56■■□□□ 1.2
XRN1-203ENST00000463916 TRIM41Q8WV44 630 aa22.56■■□□□ 1.2
XRN1-203ENST00000463916 RIMBP3CA6NJZ7 1639 aa22.52■■□□□ 1.2
XRN1-203ENST00000463916 RIMBP3BA6NNM3 1639 aa22.52■■□□□ 1.2
XRN1-203ENST00000463916 RIMBP3Q9UFD9 1639 aa22.52■■□□□ 1.2
XRN1-203ENST00000463916 ARHGEF11O15085 1522 aa22.5■■□□□ 1.19
XRN1-203ENST00000463916 CLASP1Q7Z460 1538 aa22.45■■□□□ 1.18
XRN1-203ENST00000463916 ADAMTS12P58397 1594 aa22.44■■□□□ 1.18
XRN1-203ENST00000463916 ERICH3Q5RHP9 1530 aa22.43■■□□□ 1.18
XRN1-203ENST00000463916 GRIN2AQ12879 1464 aa22.41■■□□□ 1.18
XRN1-203ENST00000463916 FHAD1B1AJZ9 1412 aa22.4■■□□□ 1.18
XRN1-203ENST00000463916 CYB5RLQ6IPT4 315 aa22.35■■□□□ 1.17
XRN1-203ENST00000463916 KIF27Q86VH2 1401 aa22.33■■□□□ 1.17
XRN1-203ENST00000463916 ARAP1Q96P48 1450 aa22.32■■□□□ 1.16
XRN1-203ENST00000463916 IGF1RP08069 1367 aa22.32■■□□□ 1.16
XRN1-203ENST00000463916 NUP160Q12769 1436 aa22.32■■□□□ 1.16
XRN1-203ENST00000463916 CEP170Q5SW79 1584 aa22.32■■□□□ 1.16
XRN1-203ENST00000463916 ERCC6L2Q5T890 1561 aa22.19■■□□□ 1.14
XRN1-203ENST00000463916 RUSC2Q8N2Y8 1516 aa22.18■■□□□ 1.14
XRN1-203ENST00000463916 CUL7Q14999 1698 aa22.17■■□□□ 1.14
XRN1-203ENST00000463916 CARMIL1Q5VZK9 1371 aa22.16■■□□□ 1.14
XRN1-203ENST00000463916 SHROOM2Q13796 1616 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms