RNA–Protein interactions for RNA: ENST00000610485.1

SNX20-205, Transcript of sorting nexin 20, humanhuman

TSL 5 BASIC

Gene SNX20, Length 557 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX20-205ENST00000610485 NISCHQ9Y2I1 1504 aa31.92■■■□□ 2.7
SNX20-205ENST00000610485 CCDC180Q9P1Z9 1646 aa28.51■■■□□ 2.15
SNX20-205ENST00000610485 ABCC9O60706 1549 aa28.15■■■□□ 2.1
SNX20-205ENST00000610485 RB1CC1Q8TDY2 1594 aa26.97■■□□□ 1.91
SNX20-205ENST00000610485 NACADO15069 1562 aa26.88■■□□□ 1.89
SNX20-205ENST00000610485 DCAF8L2P0C7V8 631 aa26.69■■□□□ 1.86
SNX20-205ENST00000610485 MYO15BQ96JP2 1530 aa26.65■■□□□ 1.86
SNX20-205ENST00000610485 ZCCHC6Q5VYS8 1495 aaKnown RBP26.55■■□□□ 1.84
SNX20-205ENST00000610485 DCAF1Q9Y4B6 1507 aa26.43■■□□□ 1.82
SNX20-205ENST00000610485 UNC13AQ9UPW8 1703 aa26.3■■□□□ 1.8
SNX20-205ENST00000610485 PABPN1Q86U42 306 aaKnown RBP eCLIP26.23■■□□□ 1.79
SNX20-205ENST00000610485 BICRAQ9NZM4 1560 aa26.17■■□□□ 1.78
SNX20-205ENST00000610485 DNAJC5BQ9UF47 199 aa26.11■■□□□ 1.77
SNX20-205ENST00000610485 SCRIBQ14160 1630 aa25.96■■□□□ 1.75
SNX20-205ENST00000610485 SHROOM4Q9ULL8 1493 aa25.91■■□□□ 1.74
SNX20-205ENST00000610485 EIF4G1Q04637 1599 aaKnown RBP25.5■■□□□ 1.67
SNX20-205ENST00000610485 CC2D2AQ9P2K1 1620 aa25.45■■□□□ 1.67
SNX20-205ENST00000610485 CECR2Q9BXF3 1484 aa25.34■■□□□ 1.65
SNX20-205ENST00000610485 SMARCA4P51532 1647 aa24.82■■□□□ 1.56
SNX20-205ENST00000610485 NCAPD3P42695 1498 aa24.82■■□□□ 1.56
SNX20-205ENST00000610485 ATAD2BQ9ULI0 1458 aa24.77■■□□□ 1.56
SNX20-205ENST00000610485 BAZ1AQ9NRL2 1556 aaPredicted RBP24.76■■□□□ 1.55
SNX20-205ENST00000610485 SMARCA2P51531 1590 aa24.71■■□□□ 1.55
SNX20-205ENST00000610485 HMGXB3Q12766 1538 aa24.66■■□□□ 1.54
SNX20-205ENST00000610485 PEG3Q9GZU2 1588 aa24.62■■□□□ 1.53
SNX20-205ENST00000610485 MROH2BQ7Z745 1585 aa24.59■■□□□ 1.53
SNX20-205ENST00000610485 BAZ1BQ9UIG0 1483 aaKnown RBP24.53■■□□□ 1.52
SNX20-205ENST00000610485 NESP48681 1621 aa24.28■■□□□ 1.48
SNX20-205ENST00000610485 WIZO95785 1651 aa24.27■■□□□ 1.48
SNX20-205ENST00000610485 ERCC6Q03468 1493 aa24.27■■□□□ 1.48
SNX20-205ENST00000610485 RSF1Q96T23 1441 aaPredicted RBP24.2■■□□□ 1.46
SNX20-205ENST00000610485 LAMC3Q9Y6N6 1575 aa24.19■■□□□ 1.46
SNX20-205ENST00000610485 CUX2O14529 1486 aa24.17■■□□□ 1.46
SNX20-205ENST00000610485 CADPSQ9ULU8 1353 aa24.05■■□□□ 1.44
SNX20-205ENST00000610485 TOP2AP11388 1531 aaKnown RBP24.05■■□□□ 1.44
SNX20-205ENST00000610485 PDS5BQ9NTI5 1447 aa24.03■■□□□ 1.44
SNX20-205ENST00000610485 THOC2Q8NI27 1593 aaKnown RBP24■■□□□ 1.43
SNX20-205ENST00000610485 KIF21AQ7Z4S6 1674 aa23.95■■□□□ 1.43
SNX20-205ENST00000610485 CFTRP13569 1480 aa23.87■■□□□ 1.41
SNX20-205ENST00000610485 MRC2Q9UBG0 1479 aa23.81■■□□□ 1.4
SNX20-205ENST00000610485 FANCD2Q9BXW9 1451 aa23.78■■□□□ 1.4
SNX20-205ENST00000610485 CEP164Q9UPV0 1460 aa23.78■■□□□ 1.4
SNX20-205ENST00000610485 WDR62O43379 1518 aa23.75■■□□□ 1.39
SNX20-205ENST00000610485 CCDC88BA6NC98 1476 aa23.75■■□□□ 1.39
SNX20-205ENST00000610485 DNAJC5Q9H3Z4 198 aa23.74■■□□□ 1.39
SNX20-205ENST00000610485 PRDM2Q13029 1718 aa23.6■■□□□ 1.37
SNX20-205ENST00000610485 URB2Q14146 1524 aaKnown RBP23.57■■□□□ 1.36
SNX20-205ENST00000610485 TOPBP1Q92547 1522 aa23.37■■□□□ 1.33
SNX20-205ENST00000610485 ABCC8Q09428 1581 aa23.35■■□□□ 1.33
SNX20-205ENST00000610485 DNMBPQ6XZF7 1577 aa23.31■■□□□ 1.32
SNX20-205ENST00000610485 IFT140Q96RY7 1462 aa23.3■■□□□ 1.32
SNX20-205ENST00000610485 SUPT5HO00267 1087 aaKnown RBP23.29■■□□□ 1.32
SNX20-205ENST00000610485 ZNF608Q9ULD9 1512 aaPredicted RBP23.21■■□□□ 1.31
SNX20-205ENST00000610485 POLA1P09884 1462 aaPredicted RBP23.16■■□□□ 1.3
SNX20-205ENST00000610485 TARBP1Q13395 1621 aaKnown RBP23.14■■□□□ 1.29
SNX20-205ENST00000610485 EIF4G3O43432 1585 aaKnown RBP23.1■■□□□ 1.29
SNX20-205ENST00000610485 CUX1P39880 1505 aa23.08■■□□□ 1.29
SNX20-205ENST00000610485 OSCARQ8IYS5 282 aa23.06■■□□□ 1.28
SNX20-205ENST00000610485 FGD5Q6ZNL6 1462 aa23.05■■□□□ 1.28
SNX20-205ENST00000610485 SOGA1O94964 1423 aa23.04■■□□□ 1.28
SNX20-205ENST00000610485 RAD54L2Q9Y4B4 1467 aa23.04■■□□□ 1.28
SNX20-205ENST00000610485 AQRO60306 1485 aaKnown RBP eCLIP23.03■■□□□ 1.28
SNX20-205ENST00000610485 WDR97A6NE52 1622 aa22.96■■□□□ 1.27
SNX20-205ENST00000610485 TDRD9Q8NDG6 1382 aaKnown RBP22.94■■□□□ 1.26
SNX20-205ENST00000610485 SNAPC4Q5SXM2 1469 aa22.83■■□□□ 1.25
SNX20-205ENST00000610485 ABCA10Q8WWZ4 1543 aa22.82■■□□□ 1.24
SNX20-205ENST00000610485 CHD1O14646 1710 aa22.82■■□□□ 1.24
SNX20-205ENST00000610485 GRIN2BQ13224 1484 aa22.82■■□□□ 1.24
SNX20-205ENST00000610485 WRNQ14191 1432 aaPredicted RBP eCLIP22.82■■□□□ 1.24
SNX20-205ENST00000610485 TOP2BQ02880 1626 aa22.8■■□□□ 1.24
SNX20-205ENST00000610485 BIVM-ERCC5R4GMW8 1640 aa22.8■■□□□ 1.24
SNX20-205ENST00000610485 MAGI1Q96QZ7 1491 aaPredicted RBP22.79■■□□□ 1.24
SNX20-205ENST00000610485 TRIM41Q8WV44 630 aa22.79■■□□□ 1.24
SNX20-205ENST00000610485 SYNJ1O43426 1573 aa22.78■■□□□ 1.24
SNX20-205ENST00000610485 GAPVD1Q14C86 1478 aa22.77■■□□□ 1.24
SNX20-205ENST00000610485 ABCA5Q8WWZ7 1642 aa22.76■■□□□ 1.23
SNX20-205ENST00000610485 FBLN2P98095 1184 aa22.76■■□□□ 1.23
SNX20-205ENST00000610485 RIMBP3CA6NJZ7 1639 aa22.75■■□□□ 1.23
SNX20-205ENST00000610485 RIMBP3BA6NNM3 1639 aa22.75■■□□□ 1.23
SNX20-205ENST00000610485 RIMBP3Q9UFD9 1639 aa22.75■■□□□ 1.23
SNX20-205ENST00000610485 ARHGEF11O15085 1522 aa22.72■■□□□ 1.23
SNX20-205ENST00000610485 PBRM1Q86U86 1689 aa22.71■■□□□ 1.23
SNX20-205ENST00000610485 SYNJ2O15056 1496 aa22.71■■□□□ 1.23
SNX20-205ENST00000610485 CHMP7Q8WUX9 453 aaPredicted RBP22.68■■□□□ 1.22
SNX20-205ENST00000610485 CLASP1Q7Z460 1538 aa22.64■■□□□ 1.21
SNX20-205ENST00000610485 ADAMTS12P58397 1594 aa22.56■■□□□ 1.2
SNX20-205ENST00000610485 ERICH3Q5RHP9 1530 aa22.54■■□□□ 1.2
SNX20-205ENST00000610485 ARAP1Q96P48 1450 aa22.54■■□□□ 1.2
SNX20-205ENST00000610485 GRIN2AQ12879 1464 aa22.53■■□□□ 1.2
SNX20-205ENST00000610485 FHAD1B1AJZ9 1412 aa22.51■■□□□ 1.19
SNX20-205ENST00000610485 CYB5RLQ6IPT4 315 aa22.49■■□□□ 1.19
SNX20-205ENST00000610485 NUP160Q12769 1436 aa22.46■■□□□ 1.19
SNX20-205ENST00000610485 CEP170Q5SW79 1584 aa22.42■■□□□ 1.18
SNX20-205ENST00000610485 KIF27Q86VH2 1401 aa22.36■■□□□ 1.17
SNX20-205ENST00000610485 IGF1RP08069 1367 aa22.32■■□□□ 1.16
SNX20-205ENST00000610485 SHROOM2Q13796 1616 aa22.31■■□□□ 1.16
SNX20-205ENST00000610485 ERCC6L2Q5T890 1561 aa22.28■■□□□ 1.16
SNX20-205ENST00000610485 CUL7Q14999 1698 aa22.26■■□□□ 1.15
SNX20-205ENST00000610485 RUSC2Q8N2Y8 1516 aa22.24■■□□□ 1.15
SNX20-205ENST00000610485 PRG4Q92954 1404 aaPredicted RBP22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms