Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HTTP42858 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HTTP42858 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
HTTP42858 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HTTP42858 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HTTP42858 HRASLS2-201ENST00000255695 742 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
HTTP42858 FTLP3-201ENST00000427242 528 ntBASIC15.42■□□□□ 0.06
HTTP42858 ASLP1-201ENST00000428790 637 ntBASIC15.42■□□□□ 0.06
HTTP42858 PRDX3P2-201ENST00000447051 611 ntBASIC15.42■□□□□ 0.06
HTTP42858 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC15.42■□□□□ 0.06
HTTP42858 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
HTTP42858 MIR6819-201ENST00000622122 61 ntBASIC15.42■□□□□ 0.06
HTTP42858 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HTTP42858 ZC3H8-201ENST00000272570 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
HTTP42858 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
HTTP42858 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HTTP42858 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
HTTP42858 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HTTP42858 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
HTTP42858 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC15.41■□□□□ 0.06
HTTP42858 LINC01508-201ENST00000425666 1013 ntTSL 3 BASIC15.41■□□□□ 0.06
HTTP42858 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC15.41■□□□□ 0.06
HTTP42858 OR52X1P-201ENST00000446117 914 ntBASIC15.41■□□□□ 0.06
HTTP42858 AACSP1-202ENST00000521412 1095 ntBASIC15.41■□□□□ 0.06
HTTP42858 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HTTP42858 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
HTTP42858 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.41■□□□□ 0.06
HTTP42858 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
HTTP42858 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HTTP42858 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.41■□□□□ 0.06
HTTP42858 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HTTP42858 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.41■□□□□ 0.06
HTTP42858 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HTTP42858 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
HTTP42858 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC15.41■□□□□ 0.06
HTTP42858 MIR4309-201ENST00000582498 83 ntBASIC15.41■□□□□ 0.06
HTTP42858 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HTTP42858 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC15.41■□□□□ 0.06
HTTP42858 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC15.41■□□□□ 0.06
HTTP42858 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HTTP42858 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HTTP42858 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HTTP42858 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HTTP42858 USP39-207ENST00000450066 2086 ntTSL 2 BASIC15.41■□□□□ 0.06
HTTP42858 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC15.41■□□□□ 0.06
HTTP42858 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.41■□□□□ 0.06
HTTP42858 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HTTP42858 AC103592.1-201ENST00000394513 664 ntBASIC15.41■□□□□ 0.06
HTTP42858 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC15.41■□□□□ 0.06
HTTP42858 PMM2-216ENST00000569958 698 ntTSL 2 BASIC15.41■□□□□ 0.06
HTTP42858 AC069061.4-201ENST00000581294 1347 ntBASIC15.41■□□□□ 0.06
HTTP42858 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
HTTP42858 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HTTP42858 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.41■□□□□ 0.06
HTTP42858 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC15.41■□□□□ 0.06
HTTP42858 KRT8P25-201ENST00000473150 1456 ntBASIC15.41■□□□□ 0.06
HTTP42858 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.4■□□□□ 0.06
HTTP42858 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
HTTP42858 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.4■□□□□ 0.06
HTTP42858 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
HTTP42858 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
HTTP42858 FAM25E-201ENST00000411791 322 ntTSL 3 BASIC15.4■□□□□ 0.06
HTTP42858 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
HTTP42858 POU5F1-202ENST00000441888 1055 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 RN7SL677P-201ENST00000466970 319 ntBASIC15.4■□□□□ 0.06
HTTP42858 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
HTTP42858 AL078624.1-201ENST00000604004 547 ntBASIC15.4■□□□□ 0.06
HTTP42858 AC010335.3-201ENST00000623767 531 ntBASIC15.4■□□□□ 0.06
HTTP42858 AL139220.2-222ENST00000627999 756 ntTSL 5 BASIC15.4■□□□□ 0.06
HTTP42858 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.4■□□□□ 0.06
HTTP42858 HSPA8P5-201ENST00000456928 2069 ntBASIC15.4■□□□□ 0.06
HTTP42858 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC15.4■□□□□ 0.06
HTTP42858 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC15.4■□□□□ 0.06
HTTP42858 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC15.4■□□□□ 0.06
HTTP42858 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
HTTP42858 SLC2A11-208ENST00000405847 730 ntTSL 2 BASIC15.4■□□□□ 0.06
HTTP42858 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 AC138392.1-201ENST00000427577 921 ntBASIC15.4■□□□□ 0.06
HTTP42858 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC15.4■□□□□ 0.06
HTTP42858 RN7SL479P-201ENST00000472003 300 ntBASIC15.4■□□□□ 0.06
HTTP42858 PDPN-208ENST00000509009 571 ntTSL 4 BASIC15.4■□□□□ 0.06
HTTP42858 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC15.4■□□□□ 0.06
HTTP42858 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC15.4■□□□□ 0.06
HTTP42858 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC15.4■□□□□ 0.06
HTTP42858 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.4■□□□□ 0.06
HTTP42858 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HTTP42858 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.4■□□□□ 0.06
HTTP42858 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
HTTP42858 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.39■□□□□ 0.06
HTTP42858 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms