RNA–Protein interactions for RNA: ENST00000509009.5

PDPN-208, Transcript of podoplanin, humanhuman

TSL 4 BASIC

Gene PDPN, Length 571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-208ENST00000509009 NISCHQ9Y2I1 1504 aa31.03■■■□□ 2.56
PDPN-208ENST00000509009 CCDC180Q9P1Z9 1646 aa27.66■■■□□ 2.02
PDPN-208ENST00000509009 ABCC9O60706 1549 aa27.66■■■□□ 2.02
PDPN-208ENST00000509009 RB1CC1Q8TDY2 1594 aa26.33■■□□□ 1.8
PDPN-208ENST00000509009 DCAF8L2P0C7V8 631 aa26.27■■□□□ 1.8
PDPN-208ENST00000509009 NACADO15069 1562 aa26.2■■□□□ 1.78
PDPN-208ENST00000509009 DNAJC5BQ9UF47 199 aa25.96■■□□□ 1.75
PDPN-208ENST00000509009 MYO15BQ96JP2 1530 aa25.89■■□□□ 1.74
PDPN-208ENST00000509009 PABPN1Q86U42 306 aaKnown RBP eCLIP25.86■■□□□ 1.73
PDPN-208ENST00000509009 ZCCHC6Q5VYS8 1495 aaKnown RBP25.7■■□□□ 1.7
PDPN-208ENST00000509009 UNC13AQ9UPW8 1703 aa25.65■■□□□ 1.7
PDPN-208ENST00000509009 DCAF1Q9Y4B6 1507 aa25.62■■□□□ 1.69
PDPN-208ENST00000509009 BICRAQ9NZM4 1560 aa25.58■■□□□ 1.69
PDPN-208ENST00000509009 SCRIBQ14160 1630 aa25.26■■□□□ 1.63
PDPN-208ENST00000509009 SHROOM4Q9ULL8 1493 aa25.21■■□□□ 1.63
PDPN-208ENST00000509009 CC2D2AQ9P2K1 1620 aa24.94■■□□□ 1.58
PDPN-208ENST00000509009 EIF4G1Q04637 1599 aaKnown RBP24.92■■□□□ 1.58
PDPN-208ENST00000509009 CECR2Q9BXF3 1484 aa24.89■■□□□ 1.58
PDPN-208ENST00000509009 NCAPD3P42695 1498 aa24.26■■□□□ 1.47
PDPN-208ENST00000509009 ATAD2BQ9ULI0 1458 aa24.19■■□□□ 1.46
PDPN-208ENST00000509009 SMARCA4P51532 1647 aa24.11■■□□□ 1.45
PDPN-208ENST00000509009 SMARCA2P51531 1590 aa24.07■■□□□ 1.44
PDPN-208ENST00000509009 BAZ1AQ9NRL2 1556 aaPredicted RBP24.03■■□□□ 1.44
PDPN-208ENST00000509009 HMGXB3Q12766 1538 aa23.99■■□□□ 1.43
PDPN-208ENST00000509009 MROH2BQ7Z745 1585 aa23.91■■□□□ 1.42
PDPN-208ENST00000509009 BAZ1BQ9UIG0 1483 aaKnown RBP23.91■■□□□ 1.42
PDPN-208ENST00000509009 PEG3Q9GZU2 1588 aa23.89■■□□□ 1.41
PDPN-208ENST00000509009 ERCC6Q03468 1493 aa23.84■■□□□ 1.41
PDPN-208ENST00000509009 NESP48681 1621 aa23.8■■□□□ 1.4
PDPN-208ENST00000509009 CUX2O14529 1486 aa23.75■■□□□ 1.39
PDPN-208ENST00000509009 DNAJC5Q9H3Z4 198 aa23.72■■□□□ 1.39
PDPN-208ENST00000509009 LAMC3Q9Y6N6 1575 aa23.6■■□□□ 1.37
PDPN-208ENST00000509009 WIZO95785 1651 aa23.59■■□□□ 1.37
PDPN-208ENST00000509009 CADPSQ9ULU8 1353 aa23.54■■□□□ 1.36
PDPN-208ENST00000509009 PDS5BQ9NTI5 1447 aa23.53■■□□□ 1.36
PDPN-208ENST00000509009 RSF1Q96T23 1441 aaPredicted RBP23.51■■□□□ 1.35
PDPN-208ENST00000509009 THOC2Q8NI27 1593 aaKnown RBP23.44■■□□□ 1.34
PDPN-208ENST00000509009 KIF21AQ7Z4S6 1674 aa23.38■■□□□ 1.33
PDPN-208ENST00000509009 TOP2AP11388 1531 aaKnown RBP23.28■■□□□ 1.32
PDPN-208ENST00000509009 CFTRP13569 1480 aa23.27■■□□□ 1.32
PDPN-208ENST00000509009 MRC2Q9UBG0 1479 aa23.27■■□□□ 1.32
PDPN-208ENST00000509009 FANCD2Q9BXW9 1451 aa23.22■■□□□ 1.31
PDPN-208ENST00000509009 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.3
PDPN-208ENST00000509009 WDR62O43379 1518 aa23.18■■□□□ 1.3
PDPN-208ENST00000509009 CCDC88BA6NC98 1476 aa23.11■■□□□ 1.29
PDPN-208ENST00000509009 URB2Q14146 1524 aaKnown RBP23.02■■□□□ 1.28
PDPN-208ENST00000509009 PRDM2Q13029 1718 aa22.85■■□□□ 1.25
PDPN-208ENST00000509009 OSCARQ8IYS5 282 aa22.82■■□□□ 1.24
PDPN-208ENST00000509009 TOPBP1Q92547 1522 aa22.79■■□□□ 1.24
PDPN-208ENST00000509009 IFT140Q96RY7 1462 aa22.76■■□□□ 1.23
PDPN-208ENST00000509009 ABCC8Q09428 1581 aa22.76■■□□□ 1.23
PDPN-208ENST00000509009 ZNF608Q9ULD9 1512 aaPredicted RBP22.72■■□□□ 1.23
PDPN-208ENST00000509009 TRIM41Q8WV44 630 aa22.7■■□□□ 1.22
PDPN-208ENST00000509009 DNMBPQ6XZF7 1577 aa22.67■■□□□ 1.22
PDPN-208ENST00000509009 SUPT5HO00267 1087 aaKnown RBP22.65■■□□□ 1.22
PDPN-208ENST00000509009 AQRO60306 1485 aaKnown RBP eCLIP22.58■■□□□ 1.2
PDPN-208ENST00000509009 POLA1P09884 1462 aaPredicted RBP22.56■■□□□ 1.2
PDPN-208ENST00000509009 TARBP1Q13395 1621 aaKnown RBP22.55■■□□□ 1.2
PDPN-208ENST00000509009 SOGA1O94964 1423 aa22.53■■□□□ 1.2
PDPN-208ENST00000509009 RAD54L2Q9Y4B4 1467 aa22.52■■□□□ 1.2
PDPN-208ENST00000509009 EIF4G3O43432 1585 aaKnown RBP22.5■■□□□ 1.19
PDPN-208ENST00000509009 TDRD9Q8NDG6 1382 aaKnown RBP22.48■■□□□ 1.19
PDPN-208ENST00000509009 CUX1P39880 1505 aa22.44■■□□□ 1.18
PDPN-208ENST00000509009 FBLN2P98095 1184 aa22.44■■□□□ 1.18
PDPN-208ENST00000509009 FGD5Q6ZNL6 1462 aa22.44■■□□□ 1.18
PDPN-208ENST00000509009 RIMBP3CA6NJZ7 1639 aa22.35■■□□□ 1.17
PDPN-208ENST00000509009 RIMBP3BA6NNM3 1639 aa22.35■■□□□ 1.17
PDPN-208ENST00000509009 RIMBP3Q9UFD9 1639 aa22.35■■□□□ 1.17
PDPN-208ENST00000509009 ARHGEF11O15085 1522 aa22.31■■□□□ 1.16
PDPN-208ENST00000509009 CHMP7Q8WUX9 453 aaPredicted RBP22.3■■□□□ 1.16
PDPN-208ENST00000509009 CHD1O14646 1710 aa22.29■■□□□ 1.16
PDPN-208ENST00000509009 CYB5RLQ6IPT4 315 aa22.28■■□□□ 1.16
PDPN-208ENST00000509009 SNAPC4Q5SXM2 1469 aa22.28■■□□□ 1.16
PDPN-208ENST00000509009 WDR97A6NE52 1622 aa22.28■■□□□ 1.16
PDPN-208ENST00000509009 GRIN2BQ13224 1484 aa22.27■■□□□ 1.16
PDPN-208ENST00000509009 MAGI1Q96QZ7 1491 aaPredicted RBP22.22■■□□□ 1.15
PDPN-208ENST00000509009 GAPVD1Q14C86 1478 aa22.22■■□□□ 1.15
PDPN-208ENST00000509009 ABCA10Q8WWZ4 1543 aa22.21■■□□□ 1.15
PDPN-208ENST00000509009 WRNQ14191 1432 aaPredicted RBP eCLIP22.17■■□□□ 1.14
PDPN-208ENST00000509009 SYNJ2O15056 1496 aa22.16■■□□□ 1.14
PDPN-208ENST00000509009 ARAP1Q96P48 1450 aa22.12■■□□□ 1.13
PDPN-208ENST00000509009 CLASP1Q7Z460 1538 aa22.11■■□□□ 1.13
PDPN-208ENST00000509009 TOP2BQ02880 1626 aa22.09■■□□□ 1.13
PDPN-208ENST00000509009 ABCA5Q8WWZ7 1642 aa22.09■■□□□ 1.13
PDPN-208ENST00000509009 SYNJ1O43426 1573 aa22.08■■□□□ 1.13
PDPN-208ENST00000509009 PBRM1Q86U86 1689 aa22.06■■□□□ 1.12
PDPN-208ENST00000509009 BIVM-ERCC5R4GMW8 1640 aa22.06■■□□□ 1.12
PDPN-208ENST00000509009 TRHP20396 242 aaPredicted RBP21.96■■□□□ 1.11
PDPN-208ENST00000509009 GRIN2AQ12879 1464 aa21.96■■□□□ 1.11
PDPN-208ENST00000509009 FHAD1B1AJZ9 1412 aa21.95■■□□□ 1.1
PDPN-208ENST00000509009 ADAMTS12P58397 1594 aa21.91■■□□□ 1.1
PDPN-208ENST00000509009 ERICH3Q5RHP9 1530 aa21.9■■□□□ 1.1
PDPN-208ENST00000509009 NUP160Q12769 1436 aa21.9■■□□□ 1.1
PDPN-208ENST00000509009 CEP170Q5SW79 1584 aa21.85■■□□□ 1.09
PDPN-208ENST00000509009 ERCC6L2Q5T890 1561 aa21.8■■□□□ 1.08
PDPN-208ENST00000509009 JPH4Q96JJ6 628 aa21.79■■□□□ 1.08
PDPN-208ENST00000509009 IGF1RP08069 1367 aa21.78■■□□□ 1.08
PDPN-208ENST00000509009 KIF27Q86VH2 1401 aa21.72■■□□□ 1.07
PDPN-208ENST00000509009 SHROOM2Q13796 1616 aa21.72■■□□□ 1.07
PDPN-208ENST00000509009 PRG4Q92954 1404 aaPredicted RBP21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms