RNA–Protein interactions for RNA: ENST00000350199.8

RNF38-202, Transcript of ring finger protein 38, humanhuman

APPRIS P1 TSL 5 BASIC

Gene RNF38, Length 5,104 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38-202ENST00000350199 NISCHQ9Y2I1 1504 aa36.37■■■■□ 3.41
RNF38-202ENST00000350199 DCAF8L2P0C7V8 631 aa34.69■■■■□ 3.14
RNF38-202ENST00000350199 SHROOM4Q9ULL8 1493 aa33.21■■■□□ 2.91
RNF38-202ENST00000350199 SUPT5HO00267 1087 aaKnown RBP33.15■■■□□ 2.9
RNF38-202ENST00000350199 EHMT2Q96KQ7 1210 aa31.37■■■□□ 2.61
RNF38-202ENST00000350199 FAM9AQ8IZU1 332 aaPredicted RBP31.02■■■□□ 2.56
RNF38-202ENST00000350199 TRIM41Q8WV44 630 aa30.82■■■□□ 2.52
RNF38-202ENST00000350199 ABCC9O60706 1549 aa30.7■■■□□ 2.5
RNF38-202ENST00000350199 APLP2Q06481 763 aa30.43■■■□□ 2.46
RNF38-202ENST00000350199 PCGF6Q9BYE7 350 aa30.41■■■□□ 2.46
RNF38-202ENST00000350199 CCDC180Q9P1Z9 1646 aa30.32■■■□□ 2.44
RNF38-202ENST00000350199 CHIC1Q5VXU3 224 aa30.3■■■□□ 2.44
RNF38-202ENST00000350199 ZCCHC6Q5VYS8 1495 aaKnown RBP30.29■■■□□ 2.44
RNF38-202ENST00000350199 TTBK1Q5TCY1 1321 aaPredicted RBP30.22■■■□□ 2.43
RNF38-202ENST00000350199 RANGAP1P46060 587 aaPredicted RBP30.12■■■□□ 2.41
RNF38-202ENST00000350199 UBTFP17480 764 aaKnown RBP30.09■■■□□ 2.41
RNF38-202ENST00000350199 PABPN1Q86U42 306 aaKnown RBP eCLIP30.03■■■□□ 2.4
RNF38-202ENST00000350199 LOC105371045A0A1W2PR82 267 aa29.89■■■□□ 2.38
RNF38-202ENST00000350199 SCRIBQ14160 1630 aa29.71■■■□□ 2.35
RNF38-202ENST00000350199 PPARGC1BQ86YN6 1023 aaKnown RBP29.63■■■□□ 2.33
RNF38-202ENST00000350199 ATP1B4Q9UN42 357 aaPredicted RBP29.61■■■□□ 2.33
RNF38-202ENST00000350199 ZEB1P37275 1124 aaPredicted RBP29.56■■■□□ 2.32
RNF38-202ENST00000350199 CCER1Q8TC90 406 aaPredicted RBP29.56■■■□□ 2.32
RNF38-202ENST00000350199 TRIM26Q12899 539 aaPredicted RBP29.52■■■□□ 2.32
RNF38-202ENST00000350199 RB1CC1Q8TDY2 1594 aa29.13■■■□□ 2.25
RNF38-202ENST00000350199 HRCP23327 699 aa29.1■■■□□ 2.25
RNF38-202ENST00000350199 DCAF1Q9Y4B6 1507 aa29.1■■■□□ 2.25
RNF38-202ENST00000350199 NACADO15069 1562 aa29.08■■■□□ 2.25
RNF38-202ENST00000350199 RSF1Q96T23 1441 aaPredicted RBP28.91■■■□□ 2.22
RNF38-202ENST00000350199 HNRNPUL2Q1KMD3 747 aaKnown RBP28.85■■■□□ 2.21
RNF38-202ENST00000350199 ITGAEP38570 1179 aa28.85■■■□□ 2.21
RNF38-202ENST00000350199 CSRNP3Q8WYN3 585 aa28.78■■■□□ 2.2
RNF38-202ENST00000350199 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.71■■■□□ 2.19
RNF38-202ENST00000350199 CENPBP07199 599 aaPredicted RBP28.65■■■□□ 2.18
RNF38-202ENST00000350199 PELP1Q8IZL8 1130 aaKnown RBP28.61■■■□□ 2.17
RNF38-202ENST00000350199 CECR2Q9BXF3 1484 aa28.51■■■□□ 2.15
RNF38-202ENST00000350199 MYO15BQ96JP2 1530 aa28.44■■■□□ 2.14
RNF38-202ENST00000350199 BAZ1AQ9NRL2 1556 aaPredicted RBP28.41■■■□□ 2.14
RNF38-202ENST00000350199 FAM50AQ14320 339 aaKnown RBP28.35■■■□□ 2.13
RNF38-202ENST00000350199 YTHDC1Q96MU7 727 aaKnown RBP28.35■■■□□ 2.13
RNF38-202ENST00000350199 BAZ1BQ9UIG0 1483 aaKnown RBP28.27■■■□□ 2.12
RNF38-202ENST00000350199 P3H3Q8IVL6 736 aa28.25■■■□□ 2.11
RNF38-202ENST00000350199 FBLN2P98095 1184 aa28.2■■■□□ 2.11
RNF38-202ENST00000350199 MROH2BQ7Z745 1585 aa28.2■■■□□ 2.1
RNF38-202ENST00000350199 MYT1LQ9UL68 1186 aa28.13■■■□□ 2.09
RNF38-202ENST00000350199 WRNQ14191 1432 aaPredicted RBP eCLIP28.1■■■□□ 2.09
RNF38-202ENST00000350199 EEA1Q15075 1411 aa28.01■■■□□ 2.07
RNF38-202ENST00000350199 DIEXFQ68CQ4 756 aaKnown RBP27.98■■■□□ 2.07
RNF38-202ENST00000350199 TRIM52Q96A61 297 aa27.94■■■□□ 2.06
RNF38-202ENST00000350199 ARID3CA6NKF2 412 aa27.92■■■□□ 2.06
RNF38-202ENST00000350199 NEUROD1Q13562 356 aa27.9■■■□□ 2.06
RNF38-202ENST00000350199 CLIP1P30622 1438 aa27.88■■■□□ 2.05
RNF38-202ENST00000350199 CCDC88BA6NC98 1476 aa27.87■■■□□ 2.05
RNF38-202ENST00000350199 GOLGA3Q08378 1498 aa27.87■■■□□ 2.05
RNF38-202ENST00000350199 POLR3GLQ9BT43 218 aa27.87■■■□□ 2.05
RNF38-202ENST00000350199 NEFLP07196 543 aa27.84■■■□□ 2.05
RNF38-202ENST00000350199 CEP162Q5TB80 1403 aa27.83■■■□□ 2.05
RNF38-202ENST00000350199 WIZO95785 1651 aa27.83■■■□□ 2.05
RNF38-202ENST00000350199 TNIKQ9UKE5 1360 aa27.72■■■□□ 2.03
RNF38-202ENST00000350199 SMARCA2P51531 1590 aa27.72■■■□□ 2.03
RNF38-202ENST00000350199 KIF27Q86VH2 1401 aa27.71■■■□□ 2.03
RNF38-202ENST00000350199 TOP2AP11388 1531 aaKnown RBP27.7■■■□□ 2.03
RNF38-202ENST00000350199 CEP164Q9UPV0 1460 aa27.69■■■□□ 2.02
RNF38-202ENST00000350199 SOGA1O94964 1423 aa27.66■■■□□ 2.02
RNF38-202ENST00000350199 CDK11AQ9UQ88 783 aaPredicted RBP27.66■■■□□ 2.02
RNF38-202ENST00000350199 ABCC8Q09428 1581 aa27.65■■■□□ 2.02
RNF38-202ENST00000350199 ZNF316A6NFI3 1004 aaPredicted RBP27.64■■■□□ 2.02
RNF38-202ENST00000350199 CNGB1Q14028 1251 aaPredicted RBP27.61■■■□□ 2.01
RNF38-202ENST00000350199 SMARCA4P51532 1647 aa27.58■■■□□ 2.01
RNF38-202ENST00000350199 ZNF777Q9ULD5 760 aaPredicted RBP27.56■■■□□ 2
RNF38-202ENST00000350199 ATAD2BQ9ULI0 1458 aa27.48■■□□□ 1.99
RNF38-202ENST00000350199 CHMP7Q8WUX9 453 aaPredicted RBP27.48■■□□□ 1.99
RNF38-202ENST00000350199 ZNF326Q5BKZ1 582 aaKnown RBP27.45■■□□□ 1.98
RNF38-202ENST00000350199 MTUS2Q5JR59 1369 aa27.44■■□□□ 1.98
RNF38-202ENST00000350199 CUX2O14529 1486 aa27.38■■□□□ 1.97
RNF38-202ENST00000350199 CHIC2Q9UKJ5 165 aa27.31■■□□□ 1.96
RNF38-202ENST00000350199 CARMIL1Q5VZK9 1371 aa27.29■■□□□ 1.96
RNF38-202ENST00000350199 ERICH6Q7L0X2 663 aa27.28■■□□□ 1.96
RNF38-202ENST00000350199 ANP32CO43423 234 aa27.27■■□□□ 1.96
RNF38-202ENST00000350199 TONSLQ96HA7 1378 aa27.22■■□□□ 1.95
RNF38-202ENST00000350199 ERCC6Q03468 1493 aa27.21■■□□□ 1.95
RNF38-202ENST00000350199 CADPSQ9ULU8 1353 aa27.2■■□□□ 1.95
RNF38-202ENST00000350199 SLC4A1APQ9BWU0 796 aaKnown RBP27.18■■□□□ 1.94
RNF38-202ENST00000350199 PDS5BQ9NTI5 1447 aa27.12■■□□□ 1.93
RNF38-202ENST00000350199 VPS8Q8N3P4 1428 aa27.09■■□□□ 1.93
RNF38-202ENST00000350199 FHAD1B1AJZ9 1412 aa27.05■■□□□ 1.92
RNF38-202ENST00000350199 GTF3C3Q9Y5Q9 886 aa27.04■■□□□ 1.92
RNF38-202ENST00000350199 TSPY4P0CV99 314 aa27.03■■□□□ 1.92
RNF38-202ENST00000350199 TSPY10P0CW01 314 aa27.03■■□□□ 1.92
RNF38-202ENST00000350199 RRP7BPQ9NSQ0 103 aa27.03■■□□□ 1.92
RNF38-202ENST00000350199 NPM1P06748 294 aaKnown RBP eCLIP27.03■■□□□ 1.92
RNF38-202ENST00000350199 RUSC2Q8N2Y8 1516 aa27.01■■□□□ 1.91
RNF38-202ENST00000350199 TDRD9Q8NDG6 1382 aaKnown RBP26.99■■□□□ 1.91
RNF38-202ENST00000350199 PLEKHD1A6NEE1 506 aa26.99■■□□□ 1.91
RNF38-202ENST00000350199 EIF4G1Q04637 1599 aaKnown RBP26.96■■□□□ 1.91
RNF38-202ENST00000350199 ACIN1Q9UKV3 1341 aaKnown RBP26.94■■□□□ 1.9
RNF38-202ENST00000350199 RAPGEF2Q9Y4G8 1499 aa26.93■■□□□ 1.9
RNF38-202ENST00000350199 DDX10Q13206 875 aaKnown RBP26.92■■□□□ 1.9
RNF38-202ENST00000350199 CCNB3Q8WWL7 1395 aa26.91■■□□□ 1.9
RNF38-202ENST00000350199 NCAPD3P42695 1498 aa26.9■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms