Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 SGCA-202ENST00000344627 1057 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 RPSAP61-201ENST00000412542 878 ntBASIC12.93□□□□□ -0.34
CHD8Q9HCK8 AL121994.1-201ENST00000413189 402 ntBASIC12.93□□□□□ -0.34
CHD8Q9HCK8 AL356289.1-203ENST00000439795 789 ntTSL 5 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 HLA-DRB9-201ENST00000449413 343 ntBASIC12.93□□□□□ -0.34
CHD8Q9HCK8 MOG-229ENST00000483013 279 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 MOG-232ENST00000490427 327 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 AL031058.1-201ENST00000561592 888 ntBASIC12.93□□□□□ -0.34
CHD8Q9HCK8 AC020909.3-201ENST00000598194 375 ntTSL 3 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 AC008620.2-201ENST00000510294 1569 ntBASIC12.93□□□□□ -0.34
CHD8Q9HCK8 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 AL603832.2-201ENST00000566195 2125 ntBASIC12.93□□□□□ -0.34
CHD8Q9HCK8 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 APRT-202ENST00000426324 664 ntTSL 2 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 AC022447.2-201ENST00000509750 543 ntTSL 3 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 MRNIP-216ENST00000521333 410 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 GABPB1-206ENST00000543881 1450 ntTSL 2 BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 CALU-202ENST00000449187 2438 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHD8Q9HCK8 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 PGAM1P10-201ENST00000402426 761 ntBASIC12.92□□□□□ -0.34
CHD8Q9HCK8 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 RN7SL2-201ENST00000490232 300 ntBASIC12.92□□□□□ -0.34
CHD8Q9HCK8 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 AC022424.2-201ENST00000514848 454 ntTSL 2 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 RN7SL4P-201ENST00000584058 295 ntBASIC12.92□□□□□ -0.34
CHD8Q9HCK8 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 AC108002.3-201ENST00000612629 503 ntTSL 2 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 AC007274.3-201ENST00000619838 385 ntBASIC12.92□□□□□ -0.34
CHD8Q9HCK8 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 ENO3-201ENST00000323997 1521 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 TPT1-201ENST00000309246 1008 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 LY6G6F-201ENST00000375832 920 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 AL121972.2-201ENST00000431108 556 ntTSL 4 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 POU5F1-202ENST00000441888 1055 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 GULOP-201ENST00000454030 748 ntBASIC12.92□□□□□ -0.34
CHD8Q9HCK8 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 AL136360.2-201ENST00000502636 581 ntTSL 4 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 AC008808.2-201ENST00000510349 569 ntTSL 3 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 VAMP1-204ENST00000535180 747 ntTSL 3 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 FP325317.1-201ENST00000539936 1042 ntBASIC12.92□□□□□ -0.34
CHD8Q9HCK8 IGHV3OR16-11-201ENST00000565524 349 ntBASIC12.92□□□□□ -0.34
CHD8Q9HCK8 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 AC100778.4-201ENST00000581232 582 ntTSL 4 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 AC136475.9-201ENST00000605240 497 ntBASIC12.92□□□□□ -0.34
CHD8Q9HCK8 LINC01615-203ENST00000634877 673 ntTSL 5 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC12.92□□□□□ -0.34
CHD8Q9HCK8 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms