RNA–Protein interactions for RNA: ENST00000543881.5

GABPB1-206, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 2 BASIC

Gene GABPB1, Length 1,450 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-206ENST00000543881 NISCHQ9Y2I1 1504 aa29.87■■■□□ 2.37
GABPB1-206ENST00000543881 ABCC9O60706 1549 aa27.3■■□□□ 1.96
GABPB1-206ENST00000543881 CCDC180Q9P1Z9 1646 aa26.95■■□□□ 1.9
GABPB1-206ENST00000543881 DNAJC5BQ9UF47 199 aa25.93■■□□□ 1.74
GABPB1-206ENST00000543881 RB1CC1Q8TDY2 1594 aa25.83■■□□□ 1.73
GABPB1-206ENST00000543881 NACADO15069 1562 aa25.56■■□□□ 1.68
GABPB1-206ENST00000543881 DCAF8L2P0C7V8 631 aa25.4■■□□□ 1.66
GABPB1-206ENST00000543881 PABPN1Q86U42 306 aaKnown RBP eCLIP25.39■■□□□ 1.65
GABPB1-206ENST00000543881 UNC13AQ9UPW8 1703 aa25.26■■□□□ 1.63
GABPB1-206ENST00000543881 BICRAQ9NZM4 1560 aa25.09■■□□□ 1.61
GABPB1-206ENST00000543881 MYO15BQ96JP2 1530 aa25.09■■□□□ 1.61
GABPB1-206ENST00000543881 SHROOM4Q9ULL8 1493 aa24.7■■□□□ 1.54
GABPB1-206ENST00000543881 ZCCHC6Q5VYS8 1495 aaKnown RBP24.67■■□□□ 1.54
GABPB1-206ENST00000543881 CC2D2AQ9P2K1 1620 aa24.65■■□□□ 1.54
GABPB1-206ENST00000543881 DCAF1Q9Y4B6 1507 aa24.64■■□□□ 1.54
GABPB1-206ENST00000543881 CECR2Q9BXF3 1484 aa24.63■■□□□ 1.53
GABPB1-206ENST00000543881 SCRIBQ14160 1630 aa24.55■■□□□ 1.52
GABPB1-206ENST00000543881 EIF4G1Q04637 1599 aaKnown RBP24.51■■□□□ 1.51
GABPB1-206ENST00000543881 DNAJC5Q9H3Z4 198 aa24.07■■□□□ 1.44
GABPB1-206ENST00000543881 CUX2O14529 1486 aa23.66■■□□□ 1.38
GABPB1-206ENST00000543881 NCAPD3P42695 1498 aa23.6■■□□□ 1.37
GABPB1-206ENST00000543881 ERCC6Q03468 1493 aa23.6■■□□□ 1.37
GABPB1-206ENST00000543881 ATAD2BQ9ULI0 1458 aa23.48■■□□□ 1.35
GABPB1-206ENST00000543881 SMARCA2P51531 1590 aa23.4■■□□□ 1.34
GABPB1-206ENST00000543881 HMGXB3Q12766 1538 aa23.39■■□□□ 1.34
GABPB1-206ENST00000543881 SMARCA4P51532 1647 aa23.38■■□□□ 1.33
GABPB1-206ENST00000543881 NESP48681 1621 aa23.36■■□□□ 1.33
GABPB1-206ENST00000543881 BAZ1BQ9UIG0 1483 aaKnown RBP23.25■■□□□ 1.31
GABPB1-206ENST00000543881 BAZ1AQ9NRL2 1556 aaPredicted RBP23.21■■□□□ 1.31
GABPB1-206ENST00000543881 THOC2Q8NI27 1593 aaKnown RBP23.18■■□□□ 1.3
GABPB1-206ENST00000543881 PEG3Q9GZU2 1588 aa23.14■■□□□ 1.3
GABPB1-206ENST00000543881 LAMC3Q9Y6N6 1575 aa23.13■■□□□ 1.29
GABPB1-206ENST00000543881 KIF21AQ7Z4S6 1674 aa23.04■■□□□ 1.28
GABPB1-206ENST00000543881 MROH2BQ7Z745 1585 aa23.02■■□□□ 1.28
GABPB1-206ENST00000543881 PDS5BQ9NTI5 1447 aa23.02■■□□□ 1.28
GABPB1-206ENST00000543881 CADPSQ9ULU8 1353 aa22.88■■□□□ 1.25
GABPB1-206ENST00000543881 TRIM41Q8WV44 630 aa22.87■■□□□ 1.25
GABPB1-206ENST00000543881 MRC2Q9UBG0 1479 aa22.83■■□□□ 1.25
GABPB1-206ENST00000543881 WDR62O43379 1518 aa22.79■■□□□ 1.24
GABPB1-206ENST00000543881 WIZO95785 1651 aa22.73■■□□□ 1.23
GABPB1-206ENST00000543881 CEP164Q9UPV0 1460 aa22.68■■□□□ 1.22
GABPB1-206ENST00000543881 FANCD2Q9BXW9 1451 aa22.63■■□□□ 1.21
GABPB1-206ENST00000543881 OSCARQ8IYS5 282 aa22.55■■□□□ 1.2
GABPB1-206ENST00000543881 CFTRP13569 1480 aa22.54■■□□□ 1.2
GABPB1-206ENST00000543881 URB2Q14146 1524 aaKnown RBP22.45■■□□□ 1.19
GABPB1-206ENST00000543881 RSF1Q96T23 1441 aaPredicted RBP22.41■■□□□ 1.18
GABPB1-206ENST00000543881 TOP2AP11388 1531 aaKnown RBP22.4■■□□□ 1.18
GABPB1-206ENST00000543881 RIMBP3CA6NJZ7 1639 aa22.29■■□□□ 1.16
GABPB1-206ENST00000543881 RIMBP3BA6NNM3 1639 aa22.29■■□□□ 1.16
GABPB1-206ENST00000543881 RIMBP3Q9UFD9 1639 aa22.29■■□□□ 1.16
GABPB1-206ENST00000543881 PRDM2Q13029 1718 aa22.29■■□□□ 1.16
GABPB1-206ENST00000543881 ZNF608Q9ULD9 1512 aaPredicted RBP22.24■■□□□ 1.15
GABPB1-206ENST00000543881 IFT140Q96RY7 1462 aa22.24■■□□□ 1.15
GABPB1-206ENST00000543881 ARHGEF11O15085 1522 aa22.17■■□□□ 1.14
GABPB1-206ENST00000543881 CCDC88BA6NC98 1476 aa22.17■■□□□ 1.14
GABPB1-206ENST00000543881 TOPBP1Q92547 1522 aa22.15■■□□□ 1.14
GABPB1-206ENST00000543881 EIF4G3O43432 1585 aaKnown RBP22.09■■□□□ 1.13
GABPB1-206ENST00000543881 ABCC8Q09428 1581 aa22.08■■□□□ 1.12
GABPB1-206ENST00000543881 CYB5RLQ6IPT4 315 aa22.05■■□□□ 1.12
GABPB1-206ENST00000543881 DNMBPQ6XZF7 1577 aa22.04■■□□□ 1.12
GABPB1-206ENST00000543881 CHD1O14646 1710 aa22■■□□□ 1.11
GABPB1-206ENST00000543881 AQRO60306 1485 aaKnown RBP eCLIP22■■□□□ 1.11
GABPB1-206ENST00000543881 TARBP1Q13395 1621 aaKnown RBP21.98■■□□□ 1.11
GABPB1-206ENST00000543881 FBLN2P98095 1184 aa21.94■■□□□ 1.1
GABPB1-206ENST00000543881 ARAP1Q96P48 1450 aa21.93■■□□□ 1.1
GABPB1-206ENST00000543881 TRHP20396 242 aaPredicted RBP21.92■■□□□ 1.1
GABPB1-206ENST00000543881 POLA1P09884 1462 aaPredicted RBP21.9■■□□□ 1.1
GABPB1-206ENST00000543881 RAD54L2Q9Y4B4 1467 aa21.83■■□□□ 1.09
GABPB1-206ENST00000543881 SOGA1O94964 1423 aa21.81■■□□□ 1.08
GABPB1-206ENST00000543881 TDRD9Q8NDG6 1382 aaKnown RBP21.81■■□□□ 1.08
GABPB1-206ENST00000543881 SNAPC4Q5SXM2 1469 aa21.76■■□□□ 1.07
GABPB1-206ENST00000543881 CLASP1Q7Z460 1538 aa21.73■■□□□ 1.07
GABPB1-206ENST00000543881 WDR97A6NE52 1622 aa21.72■■□□□ 1.07
GABPB1-206ENST00000543881 FGD5Q6ZNL6 1462 aa21.72■■□□□ 1.07
GABPB1-206ENST00000543881 CHMP7Q8WUX9 453 aaPredicted RBP21.71■■□□□ 1.07
GABPB1-206ENST00000543881 SYNJ1O43426 1573 aa21.69■■□□□ 1.06
GABPB1-206ENST00000543881 MAGI1Q96QZ7 1491 aaPredicted RBP21.68■■□□□ 1.06
GABPB1-206ENST00000543881 GRIN2BQ13224 1484 aa21.65■■□□□ 1.06
GABPB1-206ENST00000543881 CUX1P39880 1505 aa21.64■■□□□ 1.06
GABPB1-206ENST00000543881 SYNJ2O15056 1496 aa21.62■■□□□ 1.05
GABPB1-206ENST00000543881 PBRM1Q86U86 1689 aa21.54■■□□□ 1.04
GABPB1-206ENST00000543881 GAPVD1Q14C86 1478 aa21.53■■□□□ 1.04
GABPB1-206ENST00000543881 AEBP2Q6ZN18 517 aaPredicted RBP21.53■■□□□ 1.04
GABPB1-206ENST00000543881 SUPT5HO00267 1087 aaKnown RBP21.48■■□□□ 1.03
GABPB1-206ENST00000543881 ABCA10Q8WWZ4 1543 aa21.45■■□□□ 1.02
GABPB1-206ENST00000543881 ABCA5Q8WWZ7 1642 aa21.45■■□□□ 1.02
GABPB1-206ENST00000543881 ERCC6L2Q5T890 1561 aa21.38■■□□□ 1.01
GABPB1-206ENST00000543881 GRIN2AQ12879 1464 aa21.37■■□□□ 1.01
GABPB1-206ENST00000543881 CEP170Q5SW79 1584 aa21.31■■□□□ 1
GABPB1-206ENST00000543881 ADAMTS12P58397 1594 aa21.31■■□□□ 1
GABPB1-206ENST00000543881 NUP160Q12769 1436 aa21.31■■□□□ 1
GABPB1-206ENST00000543881 WRNQ14191 1432 aaPredicted RBP eCLIP21.31■■□□□ 1
GABPB1-206ENST00000543881 SHROOM2Q13796 1616 aa21.26■□□□□ 0.99
GABPB1-206ENST00000543881 FHAD1B1AJZ9 1412 aa21.25■□□□□ 0.99
GABPB1-206ENST00000543881 TOP2BQ02880 1626 aa21.2■□□□□ 0.98
GABPB1-206ENST00000543881 BIVM-ERCC5R4GMW8 1640 aa21.2■□□□□ 0.98
GABPB1-206ENST00000543881 KIF13AQ9H1H9 1805 aa21.17■□□□□ 0.98
GABPB1-206ENST00000543881 ERICH3Q5RHP9 1530 aa21.17■□□□□ 0.98
GABPB1-206ENST00000543881 PRG4Q92954 1404 aaPredicted RBP21.15■□□□□ 0.98
GABPB1-206ENST00000543881 JPH4Q96JJ6 628 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms