RNA–Protein interactions for RNA: ENST00000535180.5

VAMP1-204, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 3 BASIC

Gene VAMP1, Length 747 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-204ENST00000535180 NISCHQ9Y2I1 1504 aa28.09■■■□□ 2.09
VAMP1-204ENST00000535180 ABCC9O60706 1549 aa26.44■■□□□ 1.82
VAMP1-204ENST00000535180 CCDC180Q9P1Z9 1646 aa25.67■■□□□ 1.7
VAMP1-204ENST00000535180 DNAJC5BQ9UF47 199 aa25.62■■□□□ 1.69
VAMP1-204ENST00000535180 RB1CC1Q8TDY2 1594 aa24.83■■□□□ 1.57
VAMP1-204ENST00000535180 PABPN1Q86U42 306 aaKnown RBP eCLIP24.45■■□□□ 1.5
VAMP1-204ENST00000535180 NACADO15069 1562 aa24.44■■□□□ 1.5
VAMP1-204ENST00000535180 UNC13AQ9UPW8 1703 aa24.38■■□□□ 1.49
VAMP1-204ENST00000535180 DNAJC5Q9H3Z4 198 aa24.21■■□□□ 1.47
VAMP1-204ENST00000535180 BICRAQ9NZM4 1560 aa24.15■■□□□ 1.46
VAMP1-204ENST00000535180 DCAF8L2P0C7V8 631 aa24.04■■□□□ 1.44
VAMP1-204ENST00000535180 CECR2Q9BXF3 1484 aa23.93■■□□□ 1.42
VAMP1-204ENST00000535180 CC2D2AQ9P2K1 1620 aa23.9■■□□□ 1.42
VAMP1-204ENST00000535180 MYO15BQ96JP2 1530 aa23.82■■□□□ 1.4
VAMP1-204ENST00000535180 SHROOM4Q9ULL8 1493 aa23.72■■□□□ 1.39
VAMP1-204ENST00000535180 EIF4G1Q04637 1599 aaKnown RBP23.61■■□□□ 1.37
VAMP1-204ENST00000535180 SCRIBQ14160 1630 aa23.26■■□□□ 1.31
VAMP1-204ENST00000535180 CUX2O14529 1486 aa23.19■■□□□ 1.3
VAMP1-204ENST00000535180 DCAF1Q9Y4B6 1507 aa23.18■■□□□ 1.3
VAMP1-204ENST00000535180 ZCCHC6Q5VYS8 1495 aaKnown RBP23.07■■□□□ 1.28
VAMP1-204ENST00000535180 ERCC6Q03468 1493 aa22.89■■□□□ 1.25
VAMP1-204ENST00000535180 TRIM41Q8WV44 630 aa22.71■■□□□ 1.23
VAMP1-204ENST00000535180 NCAPD3P42695 1498 aa22.56■■□□□ 1.2
VAMP1-204ENST00000535180 NESP48681 1621 aa22.47■■□□□ 1.19
VAMP1-204ENST00000535180 THOC2Q8NI27 1593 aaKnown RBP22.46■■□□□ 1.19
VAMP1-204ENST00000535180 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
VAMP1-204ENST00000535180 HMGXB3Q12766 1538 aa22.31■■□□□ 1.16
VAMP1-204ENST00000535180 SMARCA2P51531 1590 aa22.25■■□□□ 1.15
VAMP1-204ENST00000535180 KIF21AQ7Z4S6 1674 aa22.23■■□□□ 1.15
VAMP1-204ENST00000535180 LAMC3Q9Y6N6 1575 aa22.21■■□□□ 1.15
VAMP1-204ENST00000535180 SMARCA4P51532 1647 aa22.13■■□□□ 1.13
VAMP1-204ENST00000535180 PDS5BQ9NTI5 1447 aa22.08■■□□□ 1.13
VAMP1-204ENST00000535180 BAZ1BQ9UIG0 1483 aaKnown RBP22.08■■□□□ 1.12
VAMP1-204ENST00000535180 BAZ1AQ9NRL2 1556 aaPredicted RBP22.06■■□□□ 1.12
VAMP1-204ENST00000535180 OSCARQ8IYS5 282 aa21.97■■□□□ 1.11
VAMP1-204ENST00000535180 MRC2Q9UBG0 1479 aa21.94■■□□□ 1.1
VAMP1-204ENST00000535180 WDR62O43379 1518 aa21.94■■□□□ 1.1
VAMP1-204ENST00000535180 PEG3Q9GZU2 1588 aa21.94■■□□□ 1.1
VAMP1-204ENST00000535180 RIMBP3CA6NJZ7 1639 aa21.82■■□□□ 1.08
VAMP1-204ENST00000535180 RIMBP3BA6NNM3 1639 aa21.82■■□□□ 1.08
VAMP1-204ENST00000535180 RIMBP3Q9UFD9 1639 aa21.82■■□□□ 1.08
VAMP1-204ENST00000535180 CADPSQ9ULU8 1353 aa21.81■■□□□ 1.08
VAMP1-204ENST00000535180 CEP164Q9UPV0 1460 aa21.66■■□□□ 1.06
VAMP1-204ENST00000535180 ARHGEF11O15085 1522 aa21.63■■□□□ 1.05
VAMP1-204ENST00000535180 MROH2BQ7Z745 1585 aa21.62■■□□□ 1.05
VAMP1-204ENST00000535180 AEBP2Q6ZN18 517 aaPredicted RBP21.59■■□□□ 1.05
VAMP1-204ENST00000535180 FANCD2Q9BXW9 1451 aa21.56■■□□□ 1.04
VAMP1-204ENST00000535180 TRHP20396 242 aaPredicted RBP21.54■■□□□ 1.04
VAMP1-204ENST00000535180 CYB5RLQ6IPT4 315 aa21.5■■□□□ 1.03
VAMP1-204ENST00000535180 URB2Q14146 1524 aaKnown RBP21.45■■□□□ 1.02
VAMP1-204ENST00000535180 CFTRP13569 1480 aa21.39■■□□□ 1.01
VAMP1-204ENST00000535180 WIZO95785 1651 aa21.36■■□□□ 1.01
VAMP1-204ENST00000535180 ARAP1Q96P48 1450 aa21.34■■□□□ 1.01
VAMP1-204ENST00000535180 ZNF608Q9ULD9 1512 aaPredicted RBP21.32■■□□□ 1
VAMP1-204ENST00000535180 IFT140Q96RY7 1462 aa21.27■■□□□ 1
VAMP1-204ENST00000535180 CHD1O14646 1710 aa21.26■□□□□ 0.99
VAMP1-204ENST00000535180 PRDM2Q13029 1718 aa21.22■□□□□ 0.99
VAMP1-204ENST00000535180 RSF1Q96T23 1441 aaPredicted RBP21.21■□□□□ 0.99
VAMP1-204ENST00000535180 EIF4G3O43432 1585 aaKnown RBP21.19■□□□□ 0.98
VAMP1-204ENST00000535180 TOPBP1Q92547 1522 aa21.07■□□□□ 0.96
VAMP1-204ENST00000535180 FBLN2P98095 1184 aa21.03■□□□□ 0.96
VAMP1-204ENST00000535180 AQRO60306 1485 aaKnown RBP eCLIP21.01■□□□□ 0.95
VAMP1-204ENST00000535180 TOP2AP11388 1531 aaKnown RBP20.99■□□□□ 0.95
VAMP1-204ENST00000535180 ABCC8Q09428 1581 aa20.98■□□□□ 0.95
VAMP1-204ENST00000535180 TARBP1Q13395 1621 aaKnown RBP20.98■□□□□ 0.95
VAMP1-204ENST00000535180 CLASP1Q7Z460 1538 aa20.94■□□□□ 0.94
VAMP1-204ENST00000535180 DNMBPQ6XZF7 1577 aa20.92■□□□□ 0.94
VAMP1-204ENST00000535180 SYNJ1O43426 1573 aa20.85■□□□□ 0.93
VAMP1-204ENST00000535180 ILDR1Q86SU0 546 aaPredicted RBP20.8■□□□□ 0.92
VAMP1-204ENST00000535180 POLA1P09884 1462 aaPredicted RBP20.78■□□□□ 0.92
VAMP1-204ENST00000535180 GAPVD1Q14C86 1478 aa20.76■□□□□ 0.91
VAMP1-204ENST00000535180 SNAPC4Q5SXM2 1469 aa20.76■□□□□ 0.91
VAMP1-204ENST00000535180 CCDC88BA6NC98 1476 aa20.75■□□□□ 0.91
VAMP1-204ENST00000535180 CHMP7Q8WUX9 453 aaPredicted RBP20.74■□□□□ 0.91
VAMP1-204ENST00000535180 TDRD9Q8NDG6 1382 aaKnown RBP20.73■□□□□ 0.91
VAMP1-204ENST00000535180 WDR97A6NE52 1622 aa20.71■□□□□ 0.91
VAMP1-204ENST00000535180 RAD54L2Q9Y4B4 1467 aa20.71■□□□□ 0.91
VAMP1-204ENST00000535180 MAGI1Q96QZ7 1491 aaPredicted RBP20.69■□□□□ 0.9
VAMP1-204ENST00000535180 SOGA1O94964 1423 aa20.67■□□□□ 0.9
VAMP1-204ENST00000535180 KIF13AQ9H1H9 1805 aa20.67■□□□□ 0.9
VAMP1-204ENST00000535180 SYNJ2O15056 1496 aa20.64■□□□□ 0.89
VAMP1-204ENST00000535180 GRIN2BQ13224 1484 aa20.59■□□□□ 0.89
VAMP1-204ENST00000535180 ERCC6L2Q5T890 1561 aa20.53■□□□□ 0.88
VAMP1-204ENST00000535180 PBRM1Q86U86 1689 aa20.53■□□□□ 0.88
VAMP1-204ENST00000535180 FGD5Q6ZNL6 1462 aa20.52■□□□□ 0.88
VAMP1-204ENST00000535180 KDM4FA0A1W2PPD8 638 aa20.5■□□□□ 0.87
VAMP1-204ENST00000535180 CEP170Q5SW79 1584 aa20.42■□□□□ 0.86
VAMP1-204ENST00000535180 SHROOM2Q13796 1616 aa20.37■□□□□ 0.85
VAMP1-204ENST00000535180 CUX1P39880 1505 aa20.37■□□□□ 0.85
VAMP1-204ENST00000535180 KDM6BO15054 1643 aa20.34■□□□□ 0.85
VAMP1-204ENST00000535180 GRIN2AQ12879 1464 aa20.33■□□□□ 0.85
VAMP1-204ENST00000535180 ABCC10Q5T3U5 1492 aa20.33■□□□□ 0.85
VAMP1-204ENST00000535180 FAM69CQ0P6D2 419 aa20.33■□□□□ 0.85
VAMP1-204ENST00000535180 ABCA5Q8WWZ7 1642 aa20.32■□□□□ 0.84
VAMP1-204ENST00000535180 NUP160Q12769 1436 aa20.3■□□□□ 0.84
VAMP1-204ENST00000535180 DIP2BQ9P265 1576 aa20.27■□□□□ 0.84
VAMP1-204ENST00000535180 TSPOAP1O95153 1857 aa20.25■□□□□ 0.83
VAMP1-204ENST00000535180 ABCA10Q8WWZ4 1543 aa20.25■□□□□ 0.83
VAMP1-204ENST00000535180 MAPKBP1O60336 1514 aa20.24■□□□□ 0.83
VAMP1-204ENST00000535180 ADAMTS12P58397 1594 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms