Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.33■□□□□ 0.36
NUP98P52948 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NUP98P52948 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.33■□□□□ 0.36
NUP98P52948 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.33■□□□□ 0.36
NUP98P52948 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.33■□□□□ 0.36
NUP98P52948 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NUP98P52948 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP98P52948 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.33■□□□□ 0.36
NUP98P52948 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP98P52948 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NUP98P52948 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC17.33■□□□□ 0.36
NUP98P52948 SEPHS2P1-201ENST00000511618 1162 ntBASIC17.33■□□□□ 0.36
NUP98P52948 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC17.33■□□□□ 0.36
NUP98P52948 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC17.33■□□□□ 0.36
NUP98P52948 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NUP98P52948 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC17.33■□□□□ 0.36
NUP98P52948 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC17.33■□□□□ 0.36
NUP98P52948 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC17.33■□□□□ 0.36
NUP98P52948 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC17.33■□□□□ 0.36
NUP98P52948 BX322534.1-201ENST00000635574 241 ntBASIC17.33■□□□□ 0.36
NUP98P52948 AC215524.1-201ENST00000635696 241 ntBASIC17.33■□□□□ 0.36
NUP98P52948 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NUP98P52948 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NUP98P52948 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP98P52948 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP98P52948 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NUP98P52948 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NUP98P52948 GOLGA8IP-202ENST00000611635 2100 ntBASIC17.32■□□□□ 0.36
NUP98P52948 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
NUP98P52948 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 AC103702.1-201ENST00000548801 2630 ntBASIC17.32■□□□□ 0.36
NUP98P52948 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
NUP98P52948 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC17.32■□□□□ 0.36
NUP98P52948 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC17.32■□□□□ 0.36
NUP98P52948 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
NUP98P52948 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC17.32■□□□□ 0.36
NUP98P52948 OS9-207ENST00000439210 1946 ntTSL 2 BASIC17.32■□□□□ 0.36
NUP98P52948 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
NUP98P52948 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.32■□□□□ 0.36
NUP98P52948 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
NUP98P52948 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 RPSAP12-201ENST00000435879 888 ntBASIC17.32■□□□□ 0.36
NUP98P52948 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 AC123912.6-201ENST00000612657 315 ntBASIC17.32■□□□□ 0.36
NUP98P52948 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC17.32■□□□□ 0.36
NUP98P52948 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC17.32■□□□□ 0.36
NUP98P52948 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 AC152010.1-201ENST00000415779 2006 ntBASIC17.32■□□□□ 0.36
NUP98P52948 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 DBET-201ENST00000630918 3363 ntBASIC17.32■□□□□ 0.36
NUP98P52948 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NUP98P52948 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
NUP98P52948 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
NUP98P52948 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC17.31■□□□□ 0.36
NUP98P52948 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
NUP98P52948 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC17.31■□□□□ 0.36
NUP98P52948 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC17.31■□□□□ 0.36
NUP98P52948 AL136084.1-201ENST00000449172 318 ntBASIC17.31■□□□□ 0.36
NUP98P52948 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC17.31■□□□□ 0.36
NUP98P52948 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 AL356740.1-201ENST00000602192 1297 ntBASIC17.31■□□□□ 0.36
NUP98P52948 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
NUP98P52948 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC17.31■□□□□ 0.36
NUP98P52948 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
NUP98P52948 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
NUP98P52948 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC17.31■□□□□ 0.36
NUP98P52948 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC17.31■□□□□ 0.36
NUP98P52948 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
NUP98P52948 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC17.31■□□□□ 0.36
NUP98P52948 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
NUP98P52948 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
NUP98P52948 MPV17-209ENST00000405983 859 ntTSL 5 BASIC17.31■□□□□ 0.36
NUP98P52948 RPL29P2-202ENST00000498671 657 ntBASIC17.31■□□□□ 0.36
NUP98P52948 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NUP98P52948 RNA5SP420-201ENST00000516997 137 ntBASIC17.31■□□□□ 0.36
NUP98P52948 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms