RNA–Protein interactions for RNA: ENST00000409219.5

CHRNA1-203, Transcript of cholinergic receptor nicotinic alpha 1 subunit, humanhuman

TSL 3 BASIC

Gene CHRNA1, Length 1,466 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1-203ENST00000409219 NISCHQ9Y2I1 1504 aa33.22■■■□□ 2.91
CHRNA1-203ENST00000409219 ABCC9O60706 1549 aa30.58■■■□□ 2.49
CHRNA1-203ENST00000409219 CCDC180Q9P1Z9 1646 aa30.1■■■□□ 2.41
CHRNA1-203ENST00000409219 DNAJC5BQ9UF47 199 aa29.14■■■□□ 2.26
CHRNA1-203ENST00000409219 RB1CC1Q8TDY2 1594 aa28.87■■■□□ 2.21
CHRNA1-203ENST00000409219 NACADO15069 1562 aa28.53■■■□□ 2.16
CHRNA1-203ENST00000409219 PABPN1Q86U42 306 aaKnown RBP eCLIP28.32■■■□□ 2.12
CHRNA1-203ENST00000409219 UNC13AQ9UPW8 1703 aa28.3■■■□□ 2.12
CHRNA1-203ENST00000409219 DCAF8L2P0C7V8 631 aa28.14■■■□□ 2.09
CHRNA1-203ENST00000409219 BICRAQ9NZM4 1560 aa28.1■■■□□ 2.09
CHRNA1-203ENST00000409219 MYO15BQ96JP2 1530 aa27.97■■■□□ 2.07
CHRNA1-203ENST00000409219 SHROOM4Q9ULL8 1493 aa27.63■■■□□ 2.01
CHRNA1-203ENST00000409219 CC2D2AQ9P2K1 1620 aa27.62■■■□□ 2.01
CHRNA1-203ENST00000409219 CECR2Q9BXF3 1484 aa27.59■■■□□ 2.01
CHRNA1-203ENST00000409219 ZCCHC6Q5VYS8 1495 aaKnown RBP27.45■■□□□ 1.99
CHRNA1-203ENST00000409219 EIF4G1Q04637 1599 aaKnown RBP27.43■■□□□ 1.98
CHRNA1-203ENST00000409219 DCAF1Q9Y4B6 1507 aa27.41■■□□□ 1.98
CHRNA1-203ENST00000409219 SCRIBQ14160 1630 aa27.37■■□□□ 1.97
CHRNA1-203ENST00000409219 DNAJC5Q9H3Z4 198 aa27.12■■□□□ 1.93
CHRNA1-203ENST00000409219 CUX2O14529 1486 aa26.59■■□□□ 1.85
CHRNA1-203ENST00000409219 ERCC6Q03468 1493 aa26.41■■□□□ 1.82
CHRNA1-203ENST00000409219 NCAPD3P42695 1498 aa26.34■■□□□ 1.81
CHRNA1-203ENST00000409219 ATAD2BQ9ULI0 1458 aa26.19■■□□□ 1.78
CHRNA1-203ENST00000409219 HMGXB3Q12766 1538 aa26.14■■□□□ 1.78
CHRNA1-203ENST00000409219 NESP48681 1621 aa26.13■■□□□ 1.77
CHRNA1-203ENST00000409219 SMARCA2P51531 1590 aa26.09■■□□□ 1.77
CHRNA1-203ENST00000409219 SMARCA4P51532 1647 aa26.06■■□□□ 1.76
CHRNA1-203ENST00000409219 THOC2Q8NI27 1593 aaKnown RBP26.03■■□□□ 1.76
CHRNA1-203ENST00000409219 BAZ1BQ9UIG0 1483 aaKnown RBP25.91■■□□□ 1.74
CHRNA1-203ENST00000409219 LAMC3Q9Y6N6 1575 aa25.86■■□□□ 1.73
CHRNA1-203ENST00000409219 PEG3Q9GZU2 1588 aa25.82■■□□□ 1.72
CHRNA1-203ENST00000409219 BAZ1AQ9NRL2 1556 aaPredicted RBP25.82■■□□□ 1.72
CHRNA1-203ENST00000409219 KIF21AQ7Z4S6 1674 aa25.82■■□□□ 1.72
CHRNA1-203ENST00000409219 TRIM41Q8WV44 630 aa25.71■■□□□ 1.71
CHRNA1-203ENST00000409219 PDS5BQ9NTI5 1447 aa25.67■■□□□ 1.7
CHRNA1-203ENST00000409219 MROH2BQ7Z745 1585 aa25.6■■□□□ 1.69
CHRNA1-203ENST00000409219 MRC2Q9UBG0 1479 aa25.53■■□□□ 1.68
CHRNA1-203ENST00000409219 WDR62O43379 1518 aa25.52■■□□□ 1.68
CHRNA1-203ENST00000409219 CADPSQ9ULU8 1353 aa25.49■■□□□ 1.67
CHRNA1-203ENST00000409219 CEP164Q9UPV0 1460 aa25.32■■□□□ 1.64
CHRNA1-203ENST00000409219 WIZO95785 1651 aa25.29■■□□□ 1.64
CHRNA1-203ENST00000409219 FANCD2Q9BXW9 1451 aa25.23■■□□□ 1.63
CHRNA1-203ENST00000409219 OSCARQ8IYS5 282 aa25.18■■□□□ 1.62
CHRNA1-203ENST00000409219 CFTRP13569 1480 aa25.11■■□□□ 1.61
CHRNA1-203ENST00000409219 URB2Q14146 1524 aaKnown RBP25.08■■□□□ 1.61
CHRNA1-203ENST00000409219 RIMBP3CA6NJZ7 1639 aa25.04■■□□□ 1.6
CHRNA1-203ENST00000409219 RIMBP3BA6NNM3 1639 aa25.04■■□□□ 1.6
CHRNA1-203ENST00000409219 RIMBP3Q9UFD9 1639 aa25.04■■□□□ 1.6
CHRNA1-203ENST00000409219 TOP2AP11388 1531 aaKnown RBP24.92■■□□□ 1.58
CHRNA1-203ENST00000409219 PRDM2Q13029 1718 aa24.9■■□□□ 1.58
CHRNA1-203ENST00000409219 ARHGEF11O15085 1522 aa24.9■■□□□ 1.58
CHRNA1-203ENST00000409219 ZNF608Q9ULD9 1512 aaPredicted RBP24.85■■□□□ 1.57
CHRNA1-203ENST00000409219 RSF1Q96T23 1441 aaPredicted RBP24.84■■□□□ 1.57
CHRNA1-203ENST00000409219 IFT140Q96RY7 1462 aa24.81■■□□□ 1.56
CHRNA1-203ENST00000409219 EIF4G3O43432 1585 aaKnown RBP24.73■■□□□ 1.55
CHRNA1-203ENST00000409219 TOPBP1Q92547 1522 aa24.71■■□□□ 1.55
CHRNA1-203ENST00000409219 CHD1O14646 1710 aa24.65■■□□□ 1.54
CHRNA1-203ENST00000409219 CYB5RLQ6IPT4 315 aa24.64■■□□□ 1.54
CHRNA1-203ENST00000409219 ARAP1Q96P48 1450 aa24.62■■□□□ 1.53
CHRNA1-203ENST00000409219 CCDC88BA6NC98 1476 aa24.61■■□□□ 1.53
CHRNA1-203ENST00000409219 DNMBPQ6XZF7 1577 aa24.58■■□□□ 1.52
CHRNA1-203ENST00000409219 ABCC8Q09428 1581 aa24.56■■□□□ 1.52
CHRNA1-203ENST00000409219 TARBP1Q13395 1621 aaKnown RBP24.56■■□□□ 1.52
CHRNA1-203ENST00000409219 TRHP20396 242 aaPredicted RBP24.53■■□□□ 1.52
CHRNA1-203ENST00000409219 AQRO60306 1485 aaKnown RBP eCLIP24.53■■□□□ 1.52
CHRNA1-203ENST00000409219 POLA1P09884 1462 aaPredicted RBP24.43■■□□□ 1.5
CHRNA1-203ENST00000409219 FBLN2P98095 1184 aa24.41■■□□□ 1.5
CHRNA1-203ENST00000409219 CLASP1Q7Z460 1538 aa24.35■■□□□ 1.49
CHRNA1-203ENST00000409219 RAD54L2Q9Y4B4 1467 aa24.33■■□□□ 1.49
CHRNA1-203ENST00000409219 SNAPC4Q5SXM2 1469 aa24.29■■□□□ 1.48
CHRNA1-203ENST00000409219 TDRD9Q8NDG6 1382 aaKnown RBP24.28■■□□□ 1.48
CHRNA1-203ENST00000409219 WDR97A6NE52 1622 aa24.25■■□□□ 1.47
CHRNA1-203ENST00000409219 SYNJ1O43426 1573 aa24.25■■□□□ 1.47
CHRNA1-203ENST00000409219 SOGA1O94964 1423 aa24.25■■□□□ 1.47
CHRNA1-203ENST00000409219 AEBP2Q6ZN18 517 aaPredicted RBP24.2■■□□□ 1.47
CHRNA1-203ENST00000409219 MAGI1Q96QZ7 1491 aaPredicted RBP24.19■■□□□ 1.46
CHRNA1-203ENST00000409219 FGD5Q6ZNL6 1462 aa24.19■■□□□ 1.46
CHRNA1-203ENST00000409219 CHMP7Q8WUX9 453 aaPredicted RBP24.14■■□□□ 1.46
CHRNA1-203ENST00000409219 SYNJ2O15056 1496 aa24.13■■□□□ 1.45
CHRNA1-203ENST00000409219 GRIN2BQ13224 1484 aa24.12■■□□□ 1.45
CHRNA1-203ENST00000409219 CUX1P39880 1505 aa24.09■■□□□ 1.45
CHRNA1-203ENST00000409219 GAPVD1Q14C86 1478 aa24.08■■□□□ 1.45
CHRNA1-203ENST00000409219 PBRM1Q86U86 1689 aa24.07■■□□□ 1.44
CHRNA1-203ENST00000409219 ABCA5Q8WWZ7 1642 aa23.93■■□□□ 1.42
CHRNA1-203ENST00000409219 ERCC6L2Q5T890 1561 aa23.92■■□□□ 1.42
CHRNA1-203ENST00000409219 ABCA10Q8WWZ4 1543 aa23.88■■□□□ 1.41
CHRNA1-203ENST00000409219 GRIN2AQ12879 1464 aa23.84■■□□□ 1.41
CHRNA1-203ENST00000409219 CEP170Q5SW79 1584 aa23.83■■□□□ 1.4
CHRNA1-203ENST00000409219 ADAMTS12P58397 1594 aa23.8■■□□□ 1.4
CHRNA1-203ENST00000409219 NUP160Q12769 1436 aa23.78■■□□□ 1.4
CHRNA1-203ENST00000409219 SHROOM2Q13796 1616 aa23.78■■□□□ 1.4
CHRNA1-203ENST00000409219 KIF13AQ9H1H9 1805 aa23.78■■□□□ 1.4
CHRNA1-203ENST00000409219 WRNQ14191 1432 aaPredicted RBP eCLIP23.64■■□□□ 1.37
CHRNA1-203ENST00000409219 FHAD1B1AJZ9 1412 aa23.63■■□□□ 1.37
CHRNA1-203ENST00000409219 BIVM-ERCC5R4GMW8 1640 aa23.58■■□□□ 1.37
CHRNA1-203ENST00000409219 ERICH3Q5RHP9 1530 aa23.57■■□□□ 1.36
CHRNA1-203ENST00000409219 TOP2BQ02880 1626 aa23.56■■□□□ 1.36
CHRNA1-203ENST00000409219 PRG4Q92954 1404 aaPredicted RBP23.56■■□□□ 1.36
CHRNA1-203ENST00000409219 ABCC10Q5T3U5 1492 aa23.52■■□□□ 1.36
CHRNA1-203ENST00000409219 DIP2BQ9P265 1576 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms