RNA–Protein interactions for RNA: ENST00000620581.4

GRIA3-208, Transcript of glutamate ionotropic receptor AMPA type subunit 3, humanhuman

TSL 1 (best) BASIC

Gene GRIA3, Length 2,991 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GRIA3-208ENST00000620581 NISCHQ9Y2I1 1504 aa32.43■■■□□ 2.78
GRIA3-208ENST00000620581 CCDC180Q9P1Z9 1646 aa29.08■■■□□ 2.25
GRIA3-208ENST00000620581 DCAF1Q9Y4B6 1507 aa27.36■■□□□ 1.97
GRIA3-208ENST00000620581 MYO15BQ96JP2 1530 aa27.34■■□□□ 1.97
GRIA3-208ENST00000620581 ZCCHC6Q5VYS8 1495 aaKnown RBP27.25■■□□□ 1.95
GRIA3-208ENST00000620581 NACADO15069 1562 aa26.96■■□□□ 1.91
GRIA3-208ENST00000620581 ABCC9O60706 1549 aa26.82■■□□□ 1.88
GRIA3-208ENST00000620581 RB1CC1Q8TDY2 1594 aa26.72■■□□□ 1.87
GRIA3-208ENST00000620581 SHROOM4Q9ULL8 1493 aa26.21■■□□□ 1.79
GRIA3-208ENST00000620581 UNC13AQ9UPW8 1703 aa26.18■■□□□ 1.78
GRIA3-208ENST00000620581 BICRAQ9NZM4 1560 aa25.84■■□□□ 1.73
GRIA3-208ENST00000620581 SCRIBQ14160 1630 aa25.82■■□□□ 1.72
GRIA3-208ENST00000620581 DCAF8L2P0C7V8 631 aa25.55■■□□□ 1.68
GRIA3-208ENST00000620581 PEG3Q9GZU2 1588 aa25.17■■□□□ 1.62
GRIA3-208ENST00000620581 BAZ1AQ9NRL2 1556 aaPredicted RBP25.17■■□□□ 1.62
GRIA3-208ENST00000620581 SMARCA4P51532 1647 aa25.1■■□□□ 1.61
GRIA3-208ENST00000620581 EIF4G1Q04637 1599 aaKnown RBP25.01■■□□□ 1.59
GRIA3-208ENST00000620581 SMARCA2P51531 1590 aa24.88■■□□□ 1.57
GRIA3-208ENST00000620581 HMGXB3Q12766 1538 aa24.85■■□□□ 1.57
GRIA3-208ENST00000620581 CECR2Q9BXF3 1484 aa24.82■■□□□ 1.56
GRIA3-208ENST00000620581 PABPN1Q86U42 306 aaKnown RBP eCLIP24.81■■□□□ 1.56
GRIA3-208ENST00000620581 MROH2BQ7Z745 1585 aa24.79■■□□□ 1.56
GRIA3-208ENST00000620581 RSF1Q96T23 1441 aaPredicted RBP24.73■■□□□ 1.55
GRIA3-208ENST00000620581 NCAPD3P42695 1498 aa24.72■■□□□ 1.55
GRIA3-208ENST00000620581 CC2D2AQ9P2K1 1620 aa24.7■■□□□ 1.54
GRIA3-208ENST00000620581 ATAD2BQ9ULI0 1458 aa24.66■■□□□ 1.54
GRIA3-208ENST00000620581 TOP2AP11388 1531 aaKnown RBP24.63■■□□□ 1.53
GRIA3-208ENST00000620581 WIZO95785 1651 aa24.56■■□□□ 1.52
GRIA3-208ENST00000620581 BAZ1BQ9UIG0 1483 aaKnown RBP24.41■■□□□ 1.5
GRIA3-208ENST00000620581 PRDM2Q13029 1718 aa24.31■■□□□ 1.48
GRIA3-208ENST00000620581 LAMC3Q9Y6N6 1575 aa24.07■■□□□ 1.44
GRIA3-208ENST00000620581 CCDC88BA6NC98 1476 aa24.03■■□□□ 1.44
GRIA3-208ENST00000620581 CFTRP13569 1480 aa23.95■■□□□ 1.42
GRIA3-208ENST00000620581 DNAJC5BQ9UF47 199 aa23.86■■□□□ 1.41
GRIA3-208ENST00000620581 CADPSQ9ULU8 1353 aa23.79■■□□□ 1.4
GRIA3-208ENST00000620581 SUPT5HO00267 1087 aaKnown RBP23.67■■□□□ 1.38
GRIA3-208ENST00000620581 PDS5BQ9NTI5 1447 aa23.61■■□□□ 1.37
GRIA3-208ENST00000620581 BIVM-ERCC5R4GMW8 1640 aa23.61■■□□□ 1.37
GRIA3-208ENST00000620581 ABCC8Q09428 1581 aa23.59■■□□□ 1.37
GRIA3-208ENST00000620581 KIF21AQ7Z4S6 1674 aa23.57■■□□□ 1.36
GRIA3-208ENST00000620581 THOC2Q8NI27 1593 aaKnown RBP23.52■■□□□ 1.36
GRIA3-208ENST00000620581 WDR97A6NE52 1622 aa23.5■■□□□ 1.35
GRIA3-208ENST00000620581 FANCD2Q9BXW9 1451 aa23.49■■□□□ 1.35
GRIA3-208ENST00000620581 WDR62O43379 1518 aa23.49■■□□□ 1.35
GRIA3-208ENST00000620581 DNMBPQ6XZF7 1577 aa23.48■■□□□ 1.35
GRIA3-208ENST00000620581 CEP164Q9UPV0 1460 aa23.47■■□□□ 1.35
GRIA3-208ENST00000620581 TOP2BQ02880 1626 aa23.47■■□□□ 1.35
GRIA3-208ENST00000620581 NESP48681 1621 aa23.43■■□□□ 1.34
GRIA3-208ENST00000620581 MRC2Q9UBG0 1479 aa23.41■■□□□ 1.34
GRIA3-208ENST00000620581 CUX1P39880 1505 aa23.3■■□□□ 1.32
GRIA3-208ENST00000620581 TOPBP1Q92547 1522 aa23.27■■□□□ 1.32
GRIA3-208ENST00000620581 URB2Q14146 1524 aaKnown RBP23.27■■□□□ 1.32
GRIA3-208ENST00000620581 SYNJ1O43426 1573 aa23.27■■□□□ 1.32
GRIA3-208ENST00000620581 WRNQ14191 1432 aaPredicted RBP eCLIP23.25■■□□□ 1.31
GRIA3-208ENST00000620581 CUX2O14529 1486 aa23.25■■□□□ 1.31
GRIA3-208ENST00000620581 TARBP1Q13395 1621 aaKnown RBP23.17■■□□□ 1.3
GRIA3-208ENST00000620581 ERCC6Q03468 1493 aa23.15■■□□□ 1.3
GRIA3-208ENST00000620581 ABCA10Q8WWZ4 1543 aa23.1■■□□□ 1.29
GRIA3-208ENST00000620581 IFT140Q96RY7 1462 aa23.09■■□□□ 1.29
GRIA3-208ENST00000620581 ABCA5Q8WWZ7 1642 aa23.06■■□□□ 1.28
GRIA3-208ENST00000620581 POLA1P09884 1462 aaPredicted RBP23.05■■□□□ 1.28
GRIA3-208ENST00000620581 FGD5Q6ZNL6 1462 aa23.04■■□□□ 1.28
GRIA3-208ENST00000620581 EEA1Q15075 1411 aa23.04■■□□□ 1.28
GRIA3-208ENST00000620581 ERICH3Q5RHP9 1530 aa22.92■■□□□ 1.26
GRIA3-208ENST00000620581 PBRM1Q86U86 1689 aa22.91■■□□□ 1.26
GRIA3-208ENST00000620581 CUL7Q14999 1698 aa22.91■■□□□ 1.26
GRIA3-208ENST00000620581 CHIC1Q5VXU3 224 aa22.87■■□□□ 1.25
GRIA3-208ENST00000620581 EIF4G3O43432 1585 aaKnown RBP22.84■■□□□ 1.25
GRIA3-208ENST00000620581 SOGA1O94964 1423 aa22.83■■□□□ 1.25
GRIA3-208ENST00000620581 KIF21BO75037 1637 aa22.79■■□□□ 1.24
GRIA3-208ENST00000620581 KIF27Q86VH2 1401 aa22.77■■□□□ 1.24
GRIA3-208ENST00000620581 MAGI1Q96QZ7 1491 aaPredicted RBP22.73■■□□□ 1.23
GRIA3-208ENST00000620581 ADAMTS12P58397 1594 aa22.73■■□□□ 1.23
GRIA3-208ENST00000620581 GRIN2BQ13224 1484 aa22.71■■□□□ 1.23
GRIA3-208ENST00000620581 RAD54L2Q9Y4B4 1467 aa22.69■■□□□ 1.22
GRIA3-208ENST00000620581 GAPVD1Q14C86 1478 aa22.68■■□□□ 1.22
GRIA3-208ENST00000620581 TRIM41Q8WV44 630 aa22.65■■□□□ 1.22
GRIA3-208ENST00000620581 PRXQ9BXM0 1461 aa22.63■■□□□ 1.21
GRIA3-208ENST00000620581 ZNF608Q9ULD9 1512 aaPredicted RBP22.56■■□□□ 1.2
GRIA3-208ENST00000620581 FHAD1B1AJZ9 1412 aa22.56■■□□□ 1.2
GRIA3-208ENST00000620581 IGF1RP08069 1367 aa22.52■■□□□ 1.2
GRIA3-208ENST00000620581 CTTNBP2Q8WZ74 1663 aa22.52■■□□□ 1.2
GRIA3-208ENST00000620581 SYNJ2O15056 1496 aa22.52■■□□□ 1.2
GRIA3-208ENST00000620581 RAPGEF2Q9Y4G8 1499 aa22.46■■□□□ 1.19
GRIA3-208ENST00000620581 SNAPC4Q5SXM2 1469 aa22.44■■□□□ 1.18
GRIA3-208ENST00000620581 CHD1O14646 1710 aa22.44■■□□□ 1.18
GRIA3-208ENST00000620581 RUSC2Q8N2Y8 1516 aa22.43■■□□□ 1.18
GRIA3-208ENST00000620581 AQRO60306 1485 aaKnown RBP eCLIP22.41■■□□□ 1.18
GRIA3-208ENST00000620581 GOLGA3Q08378 1498 aa22.41■■□□□ 1.18
GRIA3-208ENST00000620581 NUP160Q12769 1436 aa22.4■■□□□ 1.18
GRIA3-208ENST00000620581 GRIN2AQ12879 1464 aa22.4■■□□□ 1.18
GRIA3-208ENST00000620581 SHROOM2Q13796 1616 aa22.4■■□□□ 1.18
GRIA3-208ENST00000620581 CLASP1Q7Z460 1538 aa22.37■■□□□ 1.17
GRIA3-208ENST00000620581 TDRD9Q8NDG6 1382 aaKnown RBP22.36■■□□□ 1.17
GRIA3-208ENST00000620581 CARMIL1Q5VZK9 1371 aa22.34■■□□□ 1.17
GRIA3-208ENST00000620581 CSRNP3Q8WYN3 585 aa22.34■■□□□ 1.17
GRIA3-208ENST00000620581 CEP170Q5SW79 1584 aa22.28■■□□□ 1.16
GRIA3-208ENST00000620581 EFCAB5A4FU69 1503 aa22.28■■□□□ 1.16
GRIA3-208ENST00000620581 UGGT2Q9NYU1 1516 aa22.27■■□□□ 1.16
GRIA3-208ENST00000620581 SAMD9Q5K651 1589 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms