Protein–RNA interactions for Protein: Q8NHV4

NEDD1, Protein NEDD1, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1Q8NHV4 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 GUSBP10-201ENST00000417412 665 ntBASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 ERP29P1-201ENST00000442902 706 ntBASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 DNM1P30-201ENST00000563586 452 ntBASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 MIR2392-201ENST00000584881 84 ntBASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 AC087392.5-201ENST00000612517 489 ntBASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 BAP1-211ENST00000615113 489 ntBASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 TP53-221ENST00000615910 1149 ntTSL 5 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 KRT8P18-201ENST00000413425 1445 ntBASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 KRT8P43-201ENST00000406052 1458 ntBASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
NEDD1Q8NHV4 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 SARS-202ENST00000369923 1882 ntTSL 5 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 SCARNA12-201ENST00000459155 270 ntBASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 NPM1P43-201ENST00000558669 786 ntBASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 COX6A1P2-201ENST00000620597 330 ntBASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
NEDD1Q8NHV4 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
NEDD1Q8NHV4 AC090643.2-201ENST00000623442 2029 ntBASIC16.58■□□□□ 0.25
NEDD1Q8NHV4 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
NEDD1Q8NHV4 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.58■□□□□ 0.25
NEDD1Q8NHV4 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC16.58■□□□□ 0.25
NEDD1Q8NHV4 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
NEDD1Q8NHV4 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
NEDD1Q8NHV4 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC16.58■□□□□ 0.25
NEDD1Q8NHV4 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
NEDD1Q8NHV4 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms