RNA–Protein interactions for RNA: ENST00000444177.1

TREX1-202, Transcript of three prime repair exonuclease 1, humanhuman

TSL 1 (best) BASIC

Gene TREX1, Length 1,200 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1-202ENST00000444177 NISCHQ9Y2I1 1504 aa34.55■■■■□ 3.12
TREX1-202ENST00000444177 CCDC180Q9P1Z9 1646 aa30.83■■■□□ 2.53
TREX1-202ENST00000444177 ABCC9O60706 1549 aa30.78■■■□□ 2.52
TREX1-202ENST00000444177 RB1CC1Q8TDY2 1594 aa29.31■■■□□ 2.28
TREX1-202ENST00000444177 DCAF8L2P0C7V8 631 aa29.21■■■□□ 2.27
TREX1-202ENST00000444177 NACADO15069 1562 aa29.18■■■□□ 2.26
TREX1-202ENST00000444177 MYO15BQ96JP2 1530 aa28.84■■■□□ 2.21
TREX1-202ENST00000444177 DNAJC5BQ9UF47 199 aa28.8■■■□□ 2.2
TREX1-202ENST00000444177 PABPN1Q86U42 306 aaKnown RBP eCLIP28.76■■■□□ 2.19
TREX1-202ENST00000444177 ZCCHC6Q5VYS8 1495 aaKnown RBP28.64■■■□□ 2.17
TREX1-202ENST00000444177 UNC13AQ9UPW8 1703 aa28.59■■■□□ 2.17
TREX1-202ENST00000444177 DCAF1Q9Y4B6 1507 aa28.53■■■□□ 2.16
TREX1-202ENST00000444177 BICRAQ9NZM4 1560 aa28.46■■■□□ 2.15
TREX1-202ENST00000444177 SCRIBQ14160 1630 aa28.14■■■□□ 2.1
TREX1-202ENST00000444177 SHROOM4Q9ULL8 1493 aa28.08■■■□□ 2.09
TREX1-202ENST00000444177 CC2D2AQ9P2K1 1620 aa27.76■■■□□ 2.03
TREX1-202ENST00000444177 EIF4G1Q04637 1599 aaKnown RBP27.75■■■□□ 2.03
TREX1-202ENST00000444177 CECR2Q9BXF3 1484 aa27.7■■■□□ 2.03
TREX1-202ENST00000444177 NCAPD3P42695 1498 aa26.98■■□□□ 1.91
TREX1-202ENST00000444177 ATAD2BQ9ULI0 1458 aa26.91■■□□□ 1.9
TREX1-202ENST00000444177 SMARCA4P51532 1647 aa26.87■■□□□ 1.89
TREX1-202ENST00000444177 SMARCA2P51531 1590 aa26.8■■□□□ 1.88
TREX1-202ENST00000444177 BAZ1AQ9NRL2 1556 aaPredicted RBP26.78■■□□□ 1.88
TREX1-202ENST00000444177 HMGXB3Q12766 1538 aa26.72■■□□□ 1.87
TREX1-202ENST00000444177 BAZ1BQ9UIG0 1483 aaKnown RBP26.64■■□□□ 1.86
TREX1-202ENST00000444177 MROH2BQ7Z745 1585 aa26.63■■□□□ 1.85
TREX1-202ENST00000444177 PEG3Q9GZU2 1588 aa26.61■■□□□ 1.85
TREX1-202ENST00000444177 ERCC6Q03468 1493 aa26.55■■□□□ 1.84
TREX1-202ENST00000444177 NESP48681 1621 aa26.48■■□□□ 1.83
TREX1-202ENST00000444177 CUX2O14529 1486 aa26.42■■□□□ 1.82
TREX1-202ENST00000444177 DNAJC5Q9H3Z4 198 aa26.32■■□□□ 1.8
TREX1-202ENST00000444177 WIZO95785 1651 aa26.28■■□□□ 1.8
TREX1-202ENST00000444177 LAMC3Q9Y6N6 1575 aa26.28■■□□□ 1.8
TREX1-202ENST00000444177 CADPSQ9ULU8 1353 aa26.19■■□□□ 1.78
TREX1-202ENST00000444177 PDS5BQ9NTI5 1447 aa26.18■■□□□ 1.78
TREX1-202ENST00000444177 RSF1Q96T23 1441 aaPredicted RBP26.17■■□□□ 1.78
TREX1-202ENST00000444177 THOC2Q8NI27 1593 aaKnown RBP26.1■■□□□ 1.77
TREX1-202ENST00000444177 KIF21AQ7Z4S6 1674 aa26.06■■□□□ 1.76
TREX1-202ENST00000444177 TOP2AP11388 1531 aaKnown RBP25.96■■□□□ 1.75
TREX1-202ENST00000444177 MRC2Q9UBG0 1479 aa25.91■■□□□ 1.74
TREX1-202ENST00000444177 CFTRP13569 1480 aa25.9■■□□□ 1.74
TREX1-202ENST00000444177 FANCD2Q9BXW9 1451 aa25.85■■□□□ 1.73
TREX1-202ENST00000444177 CEP164Q9UPV0 1460 aa25.84■■□□□ 1.73
TREX1-202ENST00000444177 WDR62O43379 1518 aa25.82■■□□□ 1.72
TREX1-202ENST00000444177 CCDC88BA6NC98 1476 aa25.72■■□□□ 1.71
TREX1-202ENST00000444177 URB2Q14146 1524 aaKnown RBP25.62■■□□□ 1.69
TREX1-202ENST00000444177 PRDM2Q13029 1718 aa25.51■■□□□ 1.67
TREX1-202ENST00000444177 TOPBP1Q92547 1522 aa25.37■■□□□ 1.65
TREX1-202ENST00000444177 OSCARQ8IYS5 282 aa25.36■■□□□ 1.65
TREX1-202ENST00000444177 IFT140Q96RY7 1462 aa25.34■■□□□ 1.65
TREX1-202ENST00000444177 ABCC8Q09428 1581 aa25.34■■□□□ 1.65
TREX1-202ENST00000444177 ZNF608Q9ULD9 1512 aaPredicted RBP25.29■■□□□ 1.64
TREX1-202ENST00000444177 DNMBPQ6XZF7 1577 aa25.27■■□□□ 1.64
TREX1-202ENST00000444177 SUPT5HO00267 1087 aaKnown RBP25.25■■□□□ 1.63
TREX1-202ENST00000444177 TRIM41Q8WV44 630 aa25.22■■□□□ 1.63
TREX1-202ENST00000444177 POLA1P09884 1462 aaPredicted RBP25.13■■□□□ 1.61
TREX1-202ENST00000444177 AQRO60306 1485 aaKnown RBP eCLIP25.11■■□□□ 1.61
TREX1-202ENST00000444177 TARBP1Q13395 1621 aaKnown RBP25.11■■□□□ 1.61
TREX1-202ENST00000444177 EIF4G3O43432 1585 aaKnown RBP25.08■■□□□ 1.61
TREX1-202ENST00000444177 SOGA1O94964 1423 aa25.06■■□□□ 1.6
TREX1-202ENST00000444177 RAD54L2Q9Y4B4 1467 aa25.06■■□□□ 1.6
TREX1-202ENST00000444177 TDRD9Q8NDG6 1382 aaKnown RBP25.01■■□□□ 1.59
TREX1-202ENST00000444177 CUX1P39880 1505 aa24.99■■□□□ 1.59
TREX1-202ENST00000444177 FGD5Q6ZNL6 1462 aa24.99■■□□□ 1.59
TREX1-202ENST00000444177 FBLN2P98095 1184 aa24.96■■□□□ 1.59
TREX1-202ENST00000444177 RIMBP3CA6NJZ7 1639 aa24.87■■□□□ 1.57
TREX1-202ENST00000444177 RIMBP3BA6NNM3 1639 aa24.87■■□□□ 1.57
TREX1-202ENST00000444177 RIMBP3Q9UFD9 1639 aa24.87■■□□□ 1.57
TREX1-202ENST00000444177 CHD1O14646 1710 aa24.85■■□□□ 1.57
TREX1-202ENST00000444177 ARHGEF11O15085 1522 aa24.84■■□□□ 1.57
TREX1-202ENST00000444177 WDR97A6NE52 1622 aa24.83■■□□□ 1.57
TREX1-202ENST00000444177 SNAPC4Q5SXM2 1469 aa24.81■■□□□ 1.56
TREX1-202ENST00000444177 CHMP7Q8WUX9 453 aaPredicted RBP24.8■■□□□ 1.56
TREX1-202ENST00000444177 GRIN2BQ13224 1484 aa24.79■■□□□ 1.56
TREX1-202ENST00000444177 CYB5RLQ6IPT4 315 aa24.75■■□□□ 1.55
TREX1-202ENST00000444177 MAGI1Q96QZ7 1491 aaPredicted RBP24.75■■□□□ 1.55
TREX1-202ENST00000444177 GAPVD1Q14C86 1478 aa24.73■■□□□ 1.55
TREX1-202ENST00000444177 ABCA10Q8WWZ4 1543 aa24.72■■□□□ 1.55
TREX1-202ENST00000444177 WRNQ14191 1432 aaPredicted RBP eCLIP24.69■■□□□ 1.54
TREX1-202ENST00000444177 SYNJ2O15056 1496 aa24.68■■□□□ 1.54
TREX1-202ENST00000444177 TOP2BQ02880 1626 aa24.62■■□□□ 1.53
TREX1-202ENST00000444177 ABCA5Q8WWZ7 1642 aa24.61■■□□□ 1.53
TREX1-202ENST00000444177 ARAP1Q96P48 1450 aa24.61■■□□□ 1.53
TREX1-202ENST00000444177 SYNJ1O43426 1573 aa24.61■■□□□ 1.53
TREX1-202ENST00000444177 CLASP1Q7Z460 1538 aa24.61■■□□□ 1.53
TREX1-202ENST00000444177 PBRM1Q86U86 1689 aa24.6■■□□□ 1.53
TREX1-202ENST00000444177 BIVM-ERCC5R4GMW8 1640 aa24.59■■□□□ 1.53
TREX1-202ENST00000444177 GRIN2AQ12879 1464 aa24.45■■□□□ 1.51
TREX1-202ENST00000444177 FHAD1B1AJZ9 1412 aa24.44■■□□□ 1.5
TREX1-202ENST00000444177 ADAMTS12P58397 1594 aa24.42■■□□□ 1.5
TREX1-202ENST00000444177 TRHP20396 242 aaPredicted RBP24.41■■□□□ 1.5
TREX1-202ENST00000444177 ERICH3Q5RHP9 1530 aa24.4■■□□□ 1.5
TREX1-202ENST00000444177 NUP160Q12769 1436 aa24.38■■□□□ 1.49
TREX1-202ENST00000444177 CEP170Q5SW79 1584 aa24.33■■□□□ 1.49
TREX1-202ENST00000444177 ERCC6L2Q5T890 1561 aa24.26■■□□□ 1.47
TREX1-202ENST00000444177 IGF1RP08069 1367 aa24.22■■□□□ 1.47
TREX1-202ENST00000444177 JPH4Q96JJ6 628 aa24.22■■□□□ 1.47
TREX1-202ENST00000444177 KIF27Q86VH2 1401 aa24.2■■□□□ 1.46
TREX1-202ENST00000444177 SHROOM2Q13796 1616 aa24.19■■□□□ 1.46
TREX1-202ENST00000444177 PRG4Q92954 1404 aaPredicted RBP24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms