Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RFC3P40938 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.26□□□□□ -0.29
RFC3P40938 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RFC3P40938 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
RFC3P40938 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
RFC3P40938 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RFC3P40938 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RFC3P40938 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
RFC3P40938 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 BEND3P1-201ENST00000421591 1944 ntBASIC13.25□□□□□ -0.29
RFC3P40938 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
RFC3P40938 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC13.25□□□□□ -0.29
RFC3P40938 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 AC239868.1-201ENST00000369385 493 ntBASIC13.25□□□□□ -0.29
RFC3P40938 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 NCR3-202ENST00000376071 541 ntTSL 5 BASIC13.25□□□□□ -0.29
RFC3P40938 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC13.25□□□□□ -0.29
RFC3P40938 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC13.25□□□□□ -0.29
RFC3P40938 AC234782.1-201ENST00000451950 919 ntBASIC13.25□□□□□ -0.29
RFC3P40938 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC13.25□□□□□ -0.29
RFC3P40938 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.25□□□□□ -0.29
RFC3P40938 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC13.25□□□□□ -0.29
RFC3P40938 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC13.25□□□□□ -0.29
RFC3P40938 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC13.25□□□□□ -0.29
RFC3P40938 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
RFC3P40938 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.25□□□□□ -0.29
RFC3P40938 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RFC3P40938 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.25□□□□□ -0.29
RFC3P40938 COL6A4P2-202ENST00000504443 2753 ntBASIC13.25□□□□□ -0.29
RFC3P40938 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.24□□□□□ -0.29
RFC3P40938 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
RFC3P40938 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.24□□□□□ -0.29
RFC3P40938 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 DGCR9-201ENST00000609630 2415 ntBASIC13.24□□□□□ -0.29
RFC3P40938 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.24□□□□□ -0.29
RFC3P40938 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.24□□□□□ -0.29
RFC3P40938 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 TBC1D3J-201ENST00000620719 1426 ntBASIC13.24□□□□□ -0.29
RFC3P40938 AC009093.10-201ENST00000641956 1442 ntBASIC13.24□□□□□ -0.29
RFC3P40938 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 CICP8-201ENST00000455800 2813 ntBASIC13.24□□□□□ -0.29
RFC3P40938 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.24□□□□□ -0.29
RFC3P40938 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
RFC3P40938 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC13.24□□□□□ -0.29
RFC3P40938 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RFC3P40938 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
RFC3P40938 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
RFC3P40938 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms