Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 SRC-202ENST00000373558 4304 ntTSL 5 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 AL583805.1-201ENST00000391389 531 ntBASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 AL627231.1-201ENST00000394467 1125 ntBASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 AC026316.1-201ENST00000398900 414 ntBASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 MPV17-204ENST00000399052 749 ntTSL 4 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 HLA-DPB2-205ENST00000435074 1188 ntBASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 AC114947.1-202ENST00000514136 344 ntBASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 CFL1-214ENST00000534769 758 ntTSL 2 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 AC103691.2-201ENST00000618824 433 ntBASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 ADAMTS7P1-201ENST00000613213 4793 ntBASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLCF1Q9UBD9 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 AC011498.7-201ENST00000624986 2027 ntBASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 RN7SL832P-201ENST00000607781 1756 ntBASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 AC090505.1-201ENST00000430515 1834 ntBASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 GSN-209ENST00000449733 2702 ntTSL 2 BASIC12.79□□□□□ -0.36
CLCF1Q9UBD9 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms