RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 NISCHQ9Y2I1 1504 aa26■■□□□ 1.75
PTPRU-205ENST00000460170 DCAF8L2P0C7V8 631 aa25.64■■□□□ 1.69
PTPRU-205ENST00000460170 SUPT5HO00267 1087 aaKnown RBP24.78■■□□□ 1.56
PTPRU-205ENST00000460170 SHROOM4Q9ULL8 1493 aa24.51■■□□□ 1.51
PTPRU-205ENST00000460170 EHMT2Q96KQ7 1210 aa23.58■■□□□ 1.37
PTPRU-205ENST00000460170 FAM9AQ8IZU1 332 aaPredicted RBP23.24■■□□□ 1.31
PTPRU-205ENST00000460170 PCGF6Q9BYE7 350 aa23.22■■□□□ 1.31
PTPRU-205ENST00000460170 APLP2Q06481 763 aa23.05■■□□□ 1.28
PTPRU-205ENST00000460170 TRIM41Q8WV44 630 aa23■■□□□ 1.27
PTPRU-205ENST00000460170 TTBK1Q5TCY1 1321 aaPredicted RBP22.81■■□□□ 1.24
PTPRU-205ENST00000460170 ZEB1P37275 1124 aaPredicted RBP22.74■■□□□ 1.23
PTPRU-205ENST00000460170 PELP1Q8IZL8 1130 aaKnown RBP22.64■■□□□ 1.21
PTPRU-205ENST00000460170 CCER1Q8TC90 406 aaPredicted RBP22.57■■□□□ 1.2
PTPRU-205ENST00000460170 CHIC1Q5VXU3 224 aa22.53■■□□□ 1.2
PTPRU-205ENST00000460170 RANGAP1P46060 587 aaPredicted RBP22.53■■□□□ 1.2
PTPRU-205ENST00000460170 UBTFP17480 764 aaKnown RBP22.52■■□□□ 1.2
PTPRU-205ENST00000460170 TRIM26Q12899 539 aaPredicted RBP22.4■■□□□ 1.18
PTPRU-205ENST00000460170 CENPBP07199 599 aaPredicted RBP22.37■■□□□ 1.17
PTPRU-205ENST00000460170 LOC105371045A0A1W2PR82 267 aa22.33■■□□□ 1.17
PTPRU-205ENST00000460170 HRCP23327 699 aa22.32■■□□□ 1.16
PTPRU-205ENST00000460170 PPARGC1BQ86YN6 1023 aaKnown RBP22.27■■□□□ 1.16
PTPRU-205ENST00000460170 ATP1B4Q9UN42 357 aaPredicted RBP22.19■■□□□ 1.14
PTPRU-205ENST00000460170 YTHDC1Q96MU7 727 aaKnown RBP21.9■■□□□ 1.1
PTPRU-205ENST00000460170 ABCC9O60706 1549 aa21.83■■□□□ 1.08
PTPRU-205ENST00000460170 HNRNPUL2Q1KMD3 747 aaKnown RBP21.75■■□□□ 1.07
PTPRU-205ENST00000460170 ITGAEP38570 1179 aa21.7■■□□□ 1.06
PTPRU-205ENST00000460170 NEFLP07196 543 aa21.68■■□□□ 1.06
PTPRU-205ENST00000460170 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.65■■□□□ 1.06
PTPRU-205ENST00000460170 ZCCHC6Q5VYS8 1495 aaKnown RBP21.63■■□□□ 1.05
PTPRU-205ENST00000460170 PABPN1Q86U42 306 aaKnown RBP eCLIP21.6■■□□□ 1.05
PTPRU-205ENST00000460170 ERICH6Q7L0X2 663 aa21.6■■□□□ 1.05
PTPRU-205ENST00000460170 DIEXFQ68CQ4 756 aaKnown RBP21.46■■□□□ 1.03
PTPRU-205ENST00000460170 CCDC180Q9P1Z9 1646 aa21.32■■□□□ 1
PTPRU-205ENST00000460170 MYT1Q01538 1121 aa21.31■■□□□ 1
PTPRU-205ENST00000460170 CSRNP3Q8WYN3 585 aa21.27■■□□□ 1
PTPRU-205ENST00000460170 SCRIBQ14160 1630 aa21.25■□□□□ 0.99
PTPRU-205ENST00000460170 FAM50AQ14320 339 aaKnown RBP21.23■□□□□ 0.99
PTPRU-205ENST00000460170 POLR3GLQ9BT43 218 aa21.2■□□□□ 0.98
PTPRU-205ENST00000460170 DCAF1Q9Y4B6 1507 aa21.18■□□□□ 0.98
PTPRU-205ENST00000460170 ZNF316A6NFI3 1004 aaPredicted RBP21.07■□□□□ 0.96
PTPRU-205ENST00000460170 MYT1LQ9UL68 1186 aa21.05■□□□□ 0.96
PTPRU-205ENST00000460170 NEUROD1Q13562 356 aa21.04■□□□□ 0.96
PTPRU-205ENST00000460170 CNGB1Q14028 1251 aaPredicted RBP21.02■□□□□ 0.96
PTPRU-205ENST00000460170 TRIM52Q96A61 297 aa20.99■□□□□ 0.95
PTPRU-205ENST00000460170 GTF3C3Q9Y5Q9 886 aa20.98■□□□□ 0.95
PTPRU-205ENST00000460170 MYO15BQ96JP2 1530 aa20.91■□□□□ 0.94
PTPRU-205ENST00000460170 RSF1Q96T23 1441 aaPredicted RBP20.87■□□□□ 0.93
PTPRU-205ENST00000460170 P3H3Q8IVL6 736 aa20.86■□□□□ 0.93
PTPRU-205ENST00000460170 ACIN1Q9UKV3 1341 aaKnown RBP20.84■□□□□ 0.93
PTPRU-205ENST00000460170 ANP32CO43423 234 aa20.83■□□□□ 0.92
PTPRU-205ENST00000460170 DAXXQ9UER7 740 aaPredicted RBP20.77■□□□□ 0.92
PTPRU-205ENST00000460170 BCANQ96GW7 911 aa20.69■□□□□ 0.9
PTPRU-205ENST00000460170 FBLN2P98095 1184 aa20.68■□□□□ 0.9
PTPRU-205ENST00000460170 ZNF326Q5BKZ1 582 aaKnown RBP20.68■□□□□ 0.9
PTPRU-205ENST00000460170 RB1CC1Q8TDY2 1594 aa20.64■□□□□ 0.9
PTPRU-205ENST00000460170 ARID3CA6NKF2 412 aa20.62■□□□□ 0.89
PTPRU-205ENST00000460170 SLC4A1APQ9BWU0 796 aaKnown RBP20.61■□□□□ 0.89
PTPRU-205ENST00000460170 NACADO15069 1562 aa20.6■□□□□ 0.89
PTPRU-205ENST00000460170 EEA1Q15075 1411 aa20.57■□□□□ 0.88
PTPRU-205ENST00000460170 CLIP1P30622 1438 aa20.57■□□□□ 0.88
PTPRU-205ENST00000460170 CDK11AQ9UQ88 783 aaPredicted RBP20.52■□□□□ 0.88
PTPRU-205ENST00000460170 CEP162Q5TB80 1403 aa20.52■□□□□ 0.88
PTPRU-205ENST00000460170 TONSLQ96HA7 1378 aa20.49■□□□□ 0.87
PTPRU-205ENST00000460170 GOLGA3Q08378 1498 aa20.48■□□□□ 0.87
PTPRU-205ENST00000460170 ZNF777Q9ULD5 760 aaPredicted RBP20.46■□□□□ 0.87
PTPRU-205ENST00000460170 CLSPNQ9HAW4 1339 aa20.46■□□□□ 0.87
PTPRU-205ENST00000460170 WRNQ14191 1432 aaPredicted RBP eCLIP20.45■□□□□ 0.86
PTPRU-205ENST00000460170 RTL5Q5HYW3 569 aaPredicted RBP20.45■□□□□ 0.86
PTPRU-205ENST00000460170 TNIKQ9UKE5 1360 aa20.41■□□□□ 0.86
PTPRU-205ENST00000460170 DDX10Q13206 875 aaKnown RBP20.41■□□□□ 0.86
PTPRU-205ENST00000460170 CECR2Q9BXF3 1484 aa20.39■□□□□ 0.86
PTPRU-205ENST00000460170 BAZ1AQ9NRL2 1556 aaPredicted RBP20.36■□□□□ 0.85
PTPRU-205ENST00000460170 MIER1Q8N108 512 aa20.33■□□□□ 0.84
PTPRU-205ENST00000460170 BAZ1BQ9UIG0 1483 aaKnown RBP20.32■□□□□ 0.84
PTPRU-205ENST00000460170 MTUS2Q5JR59 1369 aa20.31■□□□□ 0.84
PTPRU-205ENST00000460170 CHIC2Q9UKJ5 165 aa20.3■□□□□ 0.84
PTPRU-205ENST00000460170 CEP164Q9UPV0 1460 aa20.3■□□□□ 0.84
PTPRU-205ENST00000460170 FKBP8Q14318 412 aa20.29■□□□□ 0.84
PTPRU-205ENST00000460170 SCAF1Q9H7N4 1312 aaKnown RBP20.29■□□□□ 0.84
PTPRU-205ENST00000460170 HNRNPUQ00839 825 aaKnown RBP eCLIP20.26■□□□□ 0.83
PTPRU-205ENST00000460170 KIF27Q86VH2 1401 aa20.22■□□□□ 0.83
PTPRU-205ENST00000460170 FAM9BQ8IZU0 186 aa20.17■□□□□ 0.82
PTPRU-205ENST00000460170 MROH2BQ7Z745 1585 aa20.16■□□□□ 0.82
PTPRU-205ENST00000460170 SOGA1O94964 1423 aa20.14■□□□□ 0.82
PTPRU-205ENST00000460170 HIRIP3Q9BW71 556 aaPredicted RBP20.12■□□□□ 0.81
PTPRU-205ENST00000460170 CANXP27824 592 aaKnown RBP20.12■□□□□ 0.81
PTPRU-205ENST00000460170 TSPY4P0CV99 314 aa20.09■□□□□ 0.81
PTPRU-205ENST00000460170 TSPY10P0CW01 314 aa20.09■□□□□ 0.81
PTPRU-205ENST00000460170 RRP7BPQ9NSQ0 103 aa20.08■□□□□ 0.81
PTPRU-205ENST00000460170 ANP32AP39687 249 aaKnown RBP20.08■□□□□ 0.8
PTPRU-205ENST00000460170 CHMP7Q8WUX9 453 aaPredicted RBP20.05■□□□□ 0.8
PTPRU-205ENST00000460170 CCDC88BA6NC98 1476 aa20.05■□□□□ 0.8
PTPRU-205ENST00000460170 EIF4G2P78344 907 aaKnown RBP eCLIP20.05■□□□□ 0.8
PTPRU-205ENST00000460170 MRS2Q9HD23 443 aa20.04■□□□□ 0.8
PTPRU-205ENST00000460170 TMC1Q8TDI8 760 aa20.03■□□□□ 0.8
PTPRU-205ENST00000460170 NEFMP07197 916 aa20■□□□□ 0.79
PTPRU-205ENST00000460170 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20■□□□□ 0.79
PTPRU-205ENST00000460170 ZBTB47Q9UFB7 747 aaPredicted RBP19.99■□□□□ 0.79
PTPRU-205ENST00000460170 KDM2AQ9Y2K7 1162 aa19.98■□□□□ 0.79
PTPRU-205ENST00000460170 ABCC8Q09428 1581 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms