Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC012485.1-201ENST00000456601 2509 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 CACNA1G-209ENST00000502264 6921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 CACNA1G-221ENST00000510115 6912 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXA1P49639 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXA1P49639 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXA1P49639 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 MIR497HG-202ENST00000572453 3838 ntBASIC12.07□□□□□ -0.48
HOXA1P49639 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXA1P49639 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 MX1-218ENST00000619682 1980 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXA1P49639 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 TLE3-208ENST00000557907 2295 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 AAGAB-207ENST00000561452 2251 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXA1P49639 AC018445.4-201ENST00000624066 2291 ntBASIC12.07□□□□□ -0.48
HOXA1P49639 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC12.07□□□□□ -0.48
HOXA1P49639 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 POM121L14P-201ENST00000406100 1558 ntBASIC12.07□□□□□ -0.48
HOXA1P49639 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC12.07□□□□□ -0.48
HOXA1P49639 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 CCT3-211ENST00000472765 1858 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 IGHV3-42-201ENST00000520410 361 ntBASIC12.07□□□□□ -0.48
HOXA1P49639 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC12.07□□□□□ -0.48
HOXA1P49639 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.07□□□□□ -0.48
HOXA1P49639 RAB35-202ENST00000534951 939 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC12.07□□□□□ -0.48
HOXA1P49639 AC025678.2-201ENST00000562061 970 ntBASIC12.07□□□□□ -0.48
HOXA1P49639 AC036164.1-201ENST00000570544 333 ntBASIC12.07□□□□□ -0.48
HOXA1P49639 SSH2-210ENST00000582084 560 ntTSL 3 BASIC12.07□□□□□ -0.48
HOXA1P49639 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
HOXA1P49639 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC12.07□□□□□ -0.48
HOXA1P49639 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXA1P49639 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HOXA1P49639 MVK-214ENST00000629016 1591 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXA1P49639 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
HOXA1P49639 CT62-203ENST00000566432 2822 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HOXA1P49639 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 DLL1-201ENST00000366756 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC12.07□□□□□ -0.48
HOXA1P49639 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC12.07□□□□□ -0.48
HOXA1P49639 LILRB1-203ENST00000396317 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 GSTM3-201ENST00000256594 4046 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HOXA1P49639 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HOXA1P49639 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HOXA1P49639 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HOXA1P49639 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
HOXA1P49639 VENTX-201ENST00000325980 2911 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 PCDHB19P-202ENST00000625133 2914 ntBASIC12.06□□□□□ -0.48
HOXA1P49639 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
HOXA1P49639 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC12.06□□□□□ -0.48
HOXA1P49639 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 ZBTB20-211ENST00000471418 3133 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HOXA1P49639 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
HOXA1P49639 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 293 ms