Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 FLAD1-207ENST00000368433 2656 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX2P35548 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
MSX2P35548 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 LRRC59-203ENST00000576448 1531 ntBASIC13.81□□□□□ -0.2
MSX2P35548 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 NLRP2-202ENST00000339757 3422 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
MSX2P35548 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX2P35548 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC13.81□□□□□ -0.2
MSX2P35548 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.81□□□□□ -0.2
MSX2P35548 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.81□□□□□ -0.2
MSX2P35548 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 AC097493.3-201ENST00000509725 367 ntBASIC13.81□□□□□ -0.2
MSX2P35548 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX2P35548 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX2P35548 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX2P35548 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX2P35548 RARRES2P5-201ENST00000564013 466 ntBASIC13.81□□□□□ -0.2
MSX2P35548 ARL16-202ENST00000570561 768 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX2P35548 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
MSX2P35548 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC13.81□□□□□ -0.2
MSX2P35548 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC13.81□□□□□ -0.2
MSX2P35548 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.81□□□□□ -0.2
MSX2P35548 BAP1-211ENST00000615113 489 ntBASIC13.81□□□□□ -0.2
MSX2P35548 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC13.81□□□□□ -0.2
MSX2P35548 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
MSX2P35548 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
MSX2P35548 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC13.81□□□□□ -0.2
MSX2P35548 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
MSX2P35548 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC13.81□□□□□ -0.2
MSX2P35548 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.81□□□□□ -0.2
MSX2P35548 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC13.81□□□□□ -0.2
MSX2P35548 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
MSX2P35548 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
MSX2P35548 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
MSX2P35548 AC022400.8-201ENST00000623453 3599 ntBASIC13.81□□□□□ -0.2
MSX2P35548 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
MSX2P35548 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
MSX2P35548 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX2P35548 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
MSX2P35548 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX2P35548 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.8□□□□□ -0.2
MSX2P35548 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC13.8□□□□□ -0.2
MSX2P35548 AC211486.1-202ENST00000416371 468 ntBASIC13.8□□□□□ -0.2
MSX2P35548 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.8□□□□□ -0.2
MSX2P35548 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC13.8□□□□□ -0.2
MSX2P35548 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.8□□□□□ -0.2
MSX2P35548 AC114812.1-204ENST00000449669 728 ntBASIC13.8□□□□□ -0.2
MSX2P35548 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 HLA-J-203ENST00000494367 1087 ntBASIC13.8□□□□□ -0.2
MSX2P35548 AC211476.1-201ENST00000503899 468 ntBASIC13.8□□□□□ -0.2
MSX2P35548 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC13.8□□□□□ -0.2
MSX2P35548 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13.8□□□□□ -0.2
MSX2P35548 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.8□□□□□ -0.2
MSX2P35548 MIR3687-2-201ENST00000577708 61 ntBASIC13.8□□□□□ -0.2
MSX2P35548 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC13.8□□□□□ -0.2
MSX2P35548 AC004790.1-201ENST00000612686 536 ntBASIC13.8□□□□□ -0.2
MSX2P35548 MIR3687-1-201ENST00000614492 61 ntBASIC13.8□□□□□ -0.2
MSX2P35548 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC13.8□□□□□ -0.2
MSX2P35548 AC004840.1-201ENST00000636359 365 ntBASIC13.8□□□□□ -0.2
MSX2P35548 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
MSX2P35548 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 AC244453.2-201ENST00000457996 3543 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
MSX2P35548 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 AC027369.3-201ENST00000530465 3707 ntBASIC13.8□□□□□ -0.2
MSX2P35548 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MSX2P35548 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms