Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TBC1D3J-201ENST00000620719 1426 ntBASIC14.43□□□□□ -0.1
LHX3Q9UBR4 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 RN7SL67P-201ENST00000492147 296 ntBASIC14.43□□□□□ -0.1
LHX3Q9UBR4 AC008723.1-201ENST00000506922 207 ntBASIC14.43□□□□□ -0.1
LHX3Q9UBR4 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 ALG1L13P-202ENST00000519320 584 ntBASIC14.43□□□□□ -0.1
LHX3Q9UBR4 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 AL133499.1-201ENST00000596207 608 ntBASIC14.43□□□□□ -0.1
LHX3Q9UBR4 PPA1-206ENST00000625364 644 ntTSL 5 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 AC067931.2-201ENST00000623655 2003 ntBASIC14.42□□□□□ -0.1
LHX3Q9UBR4 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 BAX-205ENST00000391871 687 ntTSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 HMGA1P1-201ENST00000415560 1062 ntBASIC14.42□□□□□ -0.1
LHX3Q9UBR4 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 CEP164P1-201ENST00000455142 418 ntBASIC14.42□□□□□ -0.1
LHX3Q9UBR4 UPF3AP2-201ENST00000457924 1132 ntBASIC14.42□□□□□ -0.1
LHX3Q9UBR4 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 AC134698.3-201ENST00000523880 214 ntBASIC14.42□□□□□ -0.1
LHX3Q9UBR4 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 AC007718.1-201ENST00000621078 280 ntBASIC14.42□□□□□ -0.1
LHX3Q9UBR4 AC006453.1-201ENST00000636037 1257 ntBASIC14.42□□□□□ -0.1
LHX3Q9UBR4 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 FAM90A2P-201ENST00000511144 1395 ntBASIC14.42□□□□□ -0.1
LHX3Q9UBR4 FAM90A25P-201ENST00000528404 1395 ntBASIC14.42□□□□□ -0.1
LHX3Q9UBR4 CAP2P1-201ENST00000557743 1390 ntBASIC14.42□□□□□ -0.1
LHX3Q9UBR4 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 AMT-256ENST00000638063 1783 ntTSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 AL161772.1-201ENST00000610494 4412 ntBASIC14.42□□□□□ -0.1
LHX3Q9UBR4 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LHX3Q9UBR4 KRT18P9-201ENST00000604826 1300 ntBASIC14.41□□□□□ -0.1
LHX3Q9UBR4 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms