Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.15■□□□□ 0.18
CIITAP33076 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
CIITAP33076 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.15■□□□□ 0.18
CIITAP33076 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 MYO15B-237ENST00000642007 4893 ntBASIC16.15■□□□□ 0.18
CIITAP33076 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC16.15■□□□□ 0.18
CIITAP33076 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CIITAP33076 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 KRT18P9-201ENST00000604826 1300 ntBASIC16.15■□□□□ 0.18
CIITAP33076 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
CIITAP33076 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC16.15■□□□□ 0.18
CIITAP33076 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.15■□□□□ 0.18
CIITAP33076 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CIITAP33076 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.14■□□□□ 0.17
CIITAP33076 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CIITAP33076 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CIITAP33076 AC007326.2-201ENST00000624224 7579 ntBASIC16.14■□□□□ 0.17
CIITAP33076 AC026748.1-201ENST00000624349 3251 ntBASIC16.14■□□□□ 0.17
CIITAP33076 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
CIITAP33076 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC16.14■□□□□ 0.17
CIITAP33076 HMGA1P1-201ENST00000415560 1062 ntBASIC16.14■□□□□ 0.17
CIITAP33076 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC16.14■□□□□ 0.17
CIITAP33076 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC16.14■□□□□ 0.17
CIITAP33076 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC16.14■□□□□ 0.17
CIITAP33076 AC134698.3-201ENST00000523880 214 ntBASIC16.14■□□□□ 0.17
CIITAP33076 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC16.14■□□□□ 0.17
CIITAP33076 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.14■□□□□ 0.17
CIITAP33076 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.14■□□□□ 0.17
CIITAP33076 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC16.14■□□□□ 0.17
CIITAP33076 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CIITAP33076 AL133499.1-201ENST00000596207 608 ntBASIC16.14■□□□□ 0.17
CIITAP33076 BAP1-211ENST00000615113 489 ntBASIC16.14■□□□□ 0.17
CIITAP33076 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CIITAP33076 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.14■□□□□ 0.17
CIITAP33076 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
CIITAP33076 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.14■□□□□ 0.17
CIITAP33076 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC16.14■□□□□ 0.17
CIITAP33076 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CIITAP33076 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CIITAP33076 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
CIITAP33076 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CIITAP33076 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC16.13■□□□□ 0.17
CIITAP33076 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CIITAP33076 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.13■□□□□ 0.17
CIITAP33076 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.13■□□□□ 0.17
CIITAP33076 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC16.13■□□□□ 0.17
CIITAP33076 DDC-213ENST00000617822 1809 ntTSL 3 BASIC16.13■□□□□ 0.17
CIITAP33076 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.13■□□□□ 0.17
CIITAP33076 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
CIITAP33076 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC16.13■□□□□ 0.17
CIITAP33076 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC16.13■□□□□ 0.17
CIITAP33076 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC16.13■□□□□ 0.17
CIITAP33076 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 AC234782.1-201ENST00000451950 919 ntBASIC16.13■□□□□ 0.17
CIITAP33076 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC16.13■□□□□ 0.17
CIITAP33076 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CIITAP33076 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC16.13■□□□□ 0.17
CIITAP33076 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms