Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
ERCC3P19447 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
ERCC3P19447 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC16.77■□□□□ 0.28
ERCC3P19447 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
ERCC3P19447 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.77■□□□□ 0.28
ERCC3P19447 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC16.77■□□□□ 0.28
ERCC3P19447 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.77■□□□□ 0.28
ERCC3P19447 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC16.77■□□□□ 0.28
ERCC3P19447 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.77■□□□□ 0.28
ERCC3P19447 AL583805.1-201ENST00000391389 531 ntBASIC16.77■□□□□ 0.28
ERCC3P19447 AL512430.1-201ENST00000392575 860 ntBASIC16.77■□□□□ 0.28
ERCC3P19447 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC16.77■□□□□ 0.28
ERCC3P19447 HPGD-203ENST00000422112 805 ntTSL 2 BASIC16.77■□□□□ 0.28
ERCC3P19447 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC16.77■□□□□ 0.28
ERCC3P19447 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC16.77■□□□□ 0.28
ERCC3P19447 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC16.77■□□□□ 0.28
ERCC3P19447 AP000358.1-201ENST00000456260 156 ntBASIC16.77■□□□□ 0.28
ERCC3P19447 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC16.77■□□□□ 0.28
ERCC3P19447 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC16.77■□□□□ 0.28
ERCC3P19447 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC16.77■□□□□ 0.28
ERCC3P19447 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC16.77■□□□□ 0.28
ERCC3P19447 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
ERCC3P19447 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC3P19447 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC3P19447 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC3P19447 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC16.77■□□□□ 0.27
ERCC3P19447 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC3P19447 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.77■□□□□ 0.27
ERCC3P19447 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC3P19447 LINC01230-201ENST00000625222 3017 ntBASIC16.77■□□□□ 0.27
ERCC3P19447 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC16.77■□□□□ 0.27
ERCC3P19447 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC3P19447 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC3P19447 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC3P19447 KRT8P28-201ENST00000433288 1390 ntBASIC16.77■□□□□ 0.27
ERCC3P19447 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ERCC3P19447 AC026748.1-201ENST00000624349 3251 ntBASIC16.76■□□□□ 0.27
ERCC3P19447 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 GRK6P1-201ENST00000400595 1711 ntBASIC16.76■□□□□ 0.27
ERCC3P19447 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
ERCC3P19447 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
ERCC3P19447 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
ERCC3P19447 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
ERCC3P19447 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 BANF1P3-201ENST00000412556 261 ntBASIC16.76■□□□□ 0.27
ERCC3P19447 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC3P19447 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC3P19447 AP002803.1-201ENST00000528836 498 ntBASIC16.76■□□□□ 0.27
ERCC3P19447 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC16.76■□□□□ 0.27
ERCC3P19447 AC003686.1-201ENST00000550956 1034 ntBASIC16.76■□□□□ 0.27
ERCC3P19447 TPM1-223ENST00000560445 485 ntTSL 3 BASIC16.76■□□□□ 0.27
ERCC3P19447 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
ERCC3P19447 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC3P19447 AC005632.3-201ENST00000605544 308 ntBASIC16.76■□□□□ 0.27
ERCC3P19447 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.76■□□□□ 0.27
ERCC3P19447 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC16.76■□□□□ 0.27
ERCC3P19447 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
ERCC3P19447 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
ERCC3P19447 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC16.76■□□□□ 0.27
ERCC3P19447 AL590440.2-201ENST00000641973 1595 ntBASIC16.76■□□□□ 0.27
ERCC3P19447 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ERCC3P19447 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC16.76■□□□□ 0.27
ERCC3P19447 AHCYP4-201ENST00000419201 1315 ntBASIC16.75■□□□□ 0.27
ERCC3P19447 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC3P19447 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC3P19447 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ERCC3P19447 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
ERCC3P19447 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms