Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 AC011742.3-201ENST00000439053 820 ntBASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 HLA-J-204ENST00000495278 958 ntBASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 AL160314.3-201ENST00000556041 767 ntBASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 SNORD3B-2-202ENST00000571722 791 ntBASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 AC026740.1-201ENST00000607068 791 ntBASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL4A3BPQ9Y5P4 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 TUBBP5-203ENST00000508529 1334 ntBASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 SCARNA21-201ENST00000517026 139 ntBASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 AC011498.7-201ENST00000624986 2027 ntBASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A3BPQ9Y5P4 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 AC041040.2-201ENST00000622926 2899 ntBASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 GOLGA8VP-201ENST00000559009 1798 ntBASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 CYP46A4P-201ENST00000414953 267 ntBASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 AL008707.1-201ENST00000422498 534 ntBASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 SPTLC1P5-201ENST00000450718 252 ntBASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 IGHJ2P-201ENST00000454480 60 ntBASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 IGHVIII-5-2-201ENST00000522505 261 ntBASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 FAM90A7P-201ENST00000382628 1395 ntBASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms