Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC009477.1-201ENST00000452936 217 ntBASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 TMEM198B-204ENST00000484016 896 ntBASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 FTH1-202ENST00000526640 786 ntTSL 2 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 AC104794.3-201ENST00000566840 1248 ntBASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 SETD1B-204ENST00000619791 5901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 CACNA1G-218ENST00000507510 7014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC12.62□□□□□ -0.39
CHMP1AQ9HD42 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 AC022144.1-201ENST00000602255 1580 ntBASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 GPR161-209ENST00000539777 7655 ntTSL 2 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 AR-208ENST00000612452 10676 ntTSL 5 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 ST8SIA1-203ENST00000396037 9714 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 ADAMTSL1-205ENST00000380548 8030 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 RASL12-203ENST00000434605 982 ntTSL 2 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 DUX4L27-201ENST00000554796 1261 ntBASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 AL390955.2-201ENST00000603032 514 ntBASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 MEF2D-204ENST00000464356 5598 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 USP38-201ENST00000307017 7009 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CHMP1AQ9HD42 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 SDC3-201ENST00000336798 6392 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 TRPM2-203ENST00000397928 6221 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms