RNA–Protein interactions for RNA: ENST00000435218.6

TMEM40-204, Transcript of transmembrane protein 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TMEM40, Length 1,547 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM40-204ENST00000435218 NISCHQ9Y2I1 1504 aa35.07■■■■□ 3.2
TMEM40-204ENST00000435218 CCDC180Q9P1Z9 1646 aa30.9■■■□□ 2.54
TMEM40-204ENST00000435218 ZCCHC6Q5VYS8 1495 aaKnown RBP29.43■■■□□ 2.3
TMEM40-204ENST00000435218 ABCC9O60706 1549 aa29.16■■■□□ 2.26
TMEM40-204ENST00000435218 DCAF1Q9Y4B6 1507 aa29.12■■■□□ 2.25
TMEM40-204ENST00000435218 MYO15BQ96JP2 1530 aa28.92■■■□□ 2.22
TMEM40-204ENST00000435218 NACADO15069 1562 aa28.74■■■□□ 2.19
TMEM40-204ENST00000435218 DCAF8L2P0C7V8 631 aa28.72■■■□□ 2.19
TMEM40-204ENST00000435218 RB1CC1Q8TDY2 1594 aa28.55■■■□□ 2.16
TMEM40-204ENST00000435218 SCRIBQ14160 1630 aa28.15■■■□□ 2.1
TMEM40-204ENST00000435218 SHROOM4Q9ULL8 1493 aa28.12■■■□□ 2.09
TMEM40-204ENST00000435218 UNC13AQ9UPW8 1703 aa28.06■■■□□ 2.08
TMEM40-204ENST00000435218 BICRAQ9NZM4 1560 aa27.68■■■□□ 2.02
TMEM40-204ENST00000435218 PABPN1Q86U42 306 aaKnown RBP eCLIP27.31■■□□□ 1.96
TMEM40-204ENST00000435218 CECR2Q9BXF3 1484 aa27.17■■□□□ 1.94
TMEM40-204ENST00000435218 BAZ1AQ9NRL2 1556 aaPredicted RBP27.14■■□□□ 1.94
TMEM40-204ENST00000435218 SMARCA4P51532 1647 aa27.06■■□□□ 1.92
TMEM40-204ENST00000435218 RSF1Q96T23 1441 aaPredicted RBP27.03■■□□□ 1.92
TMEM40-204ENST00000435218 MROH2BQ7Z745 1585 aa27.03■■□□□ 1.92
TMEM40-204ENST00000435218 SUPT5HO00267 1087 aaKnown RBP26.9■■□□□ 1.9
TMEM40-204ENST00000435218 EIF4G1Q04637 1599 aaKnown RBP26.84■■□□□ 1.89
TMEM40-204ENST00000435218 WIZO95785 1651 aa26.83■■□□□ 1.89
TMEM40-204ENST00000435218 PEG3Q9GZU2 1588 aa26.82■■□□□ 1.88
TMEM40-204ENST00000435218 SMARCA2P51531 1590 aa26.67■■□□□ 1.86
TMEM40-204ENST00000435218 ATAD2BQ9ULI0 1458 aa26.61■■□□□ 1.85
TMEM40-204ENST00000435218 TOP2AP11388 1531 aaKnown RBP26.58■■□□□ 1.85
TMEM40-204ENST00000435218 CC2D2AQ9P2K1 1620 aa26.51■■□□□ 1.83
TMEM40-204ENST00000435218 HMGXB3Q12766 1538 aa26.49■■□□□ 1.83
TMEM40-204ENST00000435218 NCAPD3P42695 1498 aa26.47■■□□□ 1.83
TMEM40-204ENST00000435218 BAZ1BQ9UIG0 1483 aaKnown RBP26.44■■□□□ 1.82
TMEM40-204ENST00000435218 CCDC88BA6NC98 1476 aa26.22■■□□□ 1.79
TMEM40-204ENST00000435218 DNAJC5BQ9UF47 199 aa26.01■■□□□ 1.75
TMEM40-204ENST00000435218 PRDM2Q13029 1718 aa25.87■■□□□ 1.73
TMEM40-204ENST00000435218 CFTRP13569 1480 aa25.79■■□□□ 1.72
TMEM40-204ENST00000435218 CADPSQ9ULU8 1353 aa25.72■■□□□ 1.71
TMEM40-204ENST00000435218 CHIC1Q5VXU3 224 aa25.71■■□□□ 1.71
TMEM40-204ENST00000435218 LAMC3Q9Y6N6 1575 aa25.69■■□□□ 1.7
TMEM40-204ENST00000435218 ABCC8Q09428 1581 aa25.56■■□□□ 1.68
TMEM40-204ENST00000435218 NESP48681 1621 aa25.52■■□□□ 1.68
TMEM40-204ENST00000435218 WRNQ14191 1432 aaPredicted RBP eCLIP25.45■■□□□ 1.66
TMEM40-204ENST00000435218 FANCD2Q9BXW9 1451 aa25.42■■□□□ 1.66
TMEM40-204ENST00000435218 BIVM-ERCC5R4GMW8 1640 aa25.41■■□□□ 1.66
TMEM40-204ENST00000435218 SYNJ1O43426 1573 aa25.4■■□□□ 1.66
TMEM40-204ENST00000435218 TRIM41Q8WV44 630 aa25.4■■□□□ 1.66
TMEM40-204ENST00000435218 PDS5BQ9NTI5 1447 aa25.39■■□□□ 1.65
TMEM40-204ENST00000435218 TOP2BQ02880 1626 aa25.39■■□□□ 1.65
TMEM40-204ENST00000435218 KIF21AQ7Z4S6 1674 aa25.37■■□□□ 1.65
TMEM40-204ENST00000435218 CEP164Q9UPV0 1460 aa25.32■■□□□ 1.64
TMEM40-204ENST00000435218 CUX1P39880 1505 aa25.31■■□□□ 1.64
TMEM40-204ENST00000435218 DNMBPQ6XZF7 1577 aa25.24■■□□□ 1.63
TMEM40-204ENST00000435218 TOPBP1Q92547 1522 aa25.15■■□□□ 1.62
TMEM40-204ENST00000435218 URB2Q14146 1524 aaKnown RBP25.14■■□□□ 1.61
TMEM40-204ENST00000435218 MRC2Q9UBG0 1479 aa25.1■■□□□ 1.61
TMEM40-204ENST00000435218 FGD5Q6ZNL6 1462 aa25.06■■□□□ 1.6
TMEM40-204ENST00000435218 THOC2Q8NI27 1593 aaKnown RBP25.04■■□□□ 1.6
TMEM40-204ENST00000435218 ERCC6Q03468 1493 aa25.04■■□□□ 1.6
TMEM40-204ENST00000435218 WDR62O43379 1518 aa25.03■■□□□ 1.6
TMEM40-204ENST00000435218 EEA1Q15075 1411 aa25.02■■□□□ 1.6
TMEM40-204ENST00000435218 POLA1P09884 1462 aaPredicted RBP24.99■■□□□ 1.59
TMEM40-204ENST00000435218 SOGA1O94964 1423 aa24.97■■□□□ 1.59
TMEM40-204ENST00000435218 WDR97A6NE52 1622 aa24.95■■□□□ 1.58
TMEM40-204ENST00000435218 RUSC2Q8N2Y8 1516 aa24.89■■□□□ 1.58
TMEM40-204ENST00000435218 ABCA10Q8WWZ4 1543 aa24.89■■□□□ 1.58
TMEM40-204ENST00000435218 TARBP1Q13395 1621 aaKnown RBP24.87■■□□□ 1.57
TMEM40-204ENST00000435218 KIF27Q86VH2 1401 aa24.84■■□□□ 1.57
TMEM40-204ENST00000435218 RAD54L2Q9Y4B4 1467 aa24.83■■□□□ 1.57
TMEM40-204ENST00000435218 CUX2O14529 1486 aa24.8■■□□□ 1.56
TMEM40-204ENST00000435218 FAM9AQ8IZU1 332 aaPredicted RBP24.8■■□□□ 1.56
TMEM40-204ENST00000435218 ABCA5Q8WWZ7 1642 aa24.76■■□□□ 1.55
TMEM40-204ENST00000435218 CSRNP3Q8WYN3 585 aa24.76■■□□□ 1.55
TMEM40-204ENST00000435218 IFT140Q96RY7 1462 aa24.75■■□□□ 1.55
TMEM40-204ENST00000435218 KIF21BO75037 1637 aa24.75■■□□□ 1.55
TMEM40-204ENST00000435218 PBRM1Q86U86 1689 aa24.64■■□□□ 1.54
TMEM40-204ENST00000435218 PRXQ9BXM0 1461 aa24.64■■□□□ 1.53
TMEM40-204ENST00000435218 ERICH3Q5RHP9 1530 aa24.63■■□□□ 1.53
TMEM40-204ENST00000435218 CUL7Q14999 1698 aa24.63■■□□□ 1.53
TMEM40-204ENST00000435218 GAPVD1Q14C86 1478 aa24.62■■□□□ 1.53
TMEM40-204ENST00000435218 IGF1RP08069 1367 aa24.61■■□□□ 1.53
TMEM40-204ENST00000435218 LOC105371045A0A1W2PR82 267 aa24.61■■□□□ 1.53
TMEM40-204ENST00000435218 GOLGA3Q08378 1498 aa24.6■■□□□ 1.53
TMEM40-204ENST00000435218 TDRD9Q8NDG6 1382 aaKnown RBP24.58■■□□□ 1.52
TMEM40-204ENST00000435218 EIF4G3O43432 1585 aaKnown RBP24.57■■□□□ 1.52
TMEM40-204ENST00000435218 ZNF608Q9ULD9 1512 aaPredicted RBP24.54■■□□□ 1.52
TMEM40-204ENST00000435218 RAPGEF2Q9Y4G8 1499 aa24.51■■□□□ 1.51
TMEM40-204ENST00000435218 AQRO60306 1485 aaKnown RBP eCLIP24.5■■□□□ 1.51
TMEM40-204ENST00000435218 GRIN2BQ13224 1484 aa24.49■■□□□ 1.51
TMEM40-204ENST00000435218 CARMIL1Q5VZK9 1371 aa24.48■■□□□ 1.51
TMEM40-204ENST00000435218 TNIKQ9UKE5 1360 aa24.45■■□□□ 1.5
TMEM40-204ENST00000435218 ADAMTS12P58397 1594 aa24.44■■□□□ 1.5
TMEM40-204ENST00000435218 FHAD1B1AJZ9 1412 aa24.36■■□□□ 1.49
TMEM40-204ENST00000435218 MAGI1Q96QZ7 1491 aaPredicted RBP24.36■■□□□ 1.49
TMEM40-204ENST00000435218 EHMT2Q96KQ7 1210 aa24.35■■□□□ 1.49
TMEM40-204ENST00000435218 CTTNBP2Q8WZ74 1663 aa24.34■■□□□ 1.49
TMEM40-204ENST00000435218 UBTFP17480 764 aaKnown RBP24.34■■□□□ 1.49
TMEM40-204ENST00000435218 SNAPC4Q5SXM2 1469 aa24.33■■□□□ 1.48
TMEM40-204ENST00000435218 CEP162Q5TB80 1403 aa24.27■■□□□ 1.48
TMEM40-204ENST00000435218 SYNJ2O15056 1496 aa24.24■■□□□ 1.47
TMEM40-204ENST00000435218 GRIN2AQ12879 1464 aa24.2■■□□□ 1.46
TMEM40-204ENST00000435218 CLIP1P30622 1438 aa24.15■■□□□ 1.46
TMEM40-204ENST00000435218 CHD1O14646 1710 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms