RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 DCAF8L2P0C7V8 631 aa24.24■■□□□ 1.47
HPS3-201ENST00000296051 NISCHQ9Y2I1 1504 aa23■■□□□ 1.27
HPS3-201ENST00000296051 SUPT5HO00267 1087 aaKnown RBP22.54■■□□□ 1.2
HPS3-201ENST00000296051 SHROOM4Q9ULL8 1493 aa22.25■■□□□ 1.15
HPS3-201ENST00000296051 PCGF6Q9BYE7 350 aa21.75■■□□□ 1.07
HPS3-201ENST00000296051 EHMT2Q96KQ7 1210 aa21.74■■□□□ 1.07
HPS3-201ENST00000296051 FAM9AQ8IZU1 332 aaPredicted RBP21.2■□□□□ 0.98
HPS3-201ENST00000296051 HRCP23327 699 aa21.07■□□□□ 0.96
HPS3-201ENST00000296051 PPARGC1BQ86YN6 1023 aaKnown RBP21.05■□□□□ 0.96
HPS3-201ENST00000296051 TTBK1Q5TCY1 1321 aaPredicted RBP21.02■□□□□ 0.95
HPS3-201ENST00000296051 APLP2Q06481 763 aa20.99■□□□□ 0.95
HPS3-201ENST00000296051 RANGAP1P46060 587 aaPredicted RBP20.95■□□□□ 0.94
HPS3-201ENST00000296051 LOC105371045A0A1W2PR82 267 aa20.78■□□□□ 0.92
HPS3-201ENST00000296051 ATP1B4Q9UN42 357 aaPredicted RBP20.73■□□□□ 0.91
HPS3-201ENST00000296051 CHIC1Q5VXU3 224 aa20.71■□□□□ 0.91
HPS3-201ENST00000296051 PELP1Q8IZL8 1130 aaKnown RBP20.65■□□□□ 0.9
HPS3-201ENST00000296051 CCER1Q8TC90 406 aaPredicted RBP20.65■□□□□ 0.9
HPS3-201ENST00000296051 ZEB1P37275 1124 aaPredicted RBP20.63■□□□□ 0.89
HPS3-201ENST00000296051 TRIM41Q8WV44 630 aa20.62■□□□□ 0.89
HPS3-201ENST00000296051 TRIM26Q12899 539 aaPredicted RBP20.56■□□□□ 0.88
HPS3-201ENST00000296051 CENPBP07199 599 aaPredicted RBP20.55■□□□□ 0.88
HPS3-201ENST00000296051 YTHDC1Q96MU7 727 aaKnown RBP20.53■□□□□ 0.88
HPS3-201ENST00000296051 UBTFP17480 764 aaKnown RBP20.45■□□□□ 0.86
HPS3-201ENST00000296051 PABPN1Q86U42 306 aaKnown RBP eCLIP20.32■□□□□ 0.84
HPS3-201ENST00000296051 ABCC9O60706 1549 aa20.32■□□□□ 0.84
HPS3-201ENST00000296051 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.16■□□□□ 0.82
HPS3-201ENST00000296051 HNRNPUL2Q1KMD3 747 aaKnown RBP20.16■□□□□ 0.82
HPS3-201ENST00000296051 MYT1LQ9UL68 1186 aa20.14■□□□□ 0.81
HPS3-201ENST00000296051 MYT1Q01538 1121 aa19.96■□□□□ 0.79
HPS3-201ENST00000296051 DIEXFQ68CQ4 756 aaKnown RBP19.95■□□□□ 0.78
HPS3-201ENST00000296051 GTF3C3Q9Y5Q9 886 aa19.95■□□□□ 0.78
HPS3-201ENST00000296051 ITGAEP38570 1179 aa19.81■□□□□ 0.76
HPS3-201ENST00000296051 ERICH6Q7L0X2 663 aa19.77■□□□□ 0.75
HPS3-201ENST00000296051 FBLN2P98095 1184 aa19.75■□□□□ 0.75
HPS3-201ENST00000296051 SCAF1Q9H7N4 1312 aaKnown RBP19.71■□□□□ 0.75
HPS3-201ENST00000296051 ACIN1Q9UKV3 1341 aaKnown RBP19.7■□□□□ 0.74
HPS3-201ENST00000296051 MYO15BQ96JP2 1530 aa19.68■□□□□ 0.74
HPS3-201ENST00000296051 NEFLP07196 543 aa19.64■□□□□ 0.74
HPS3-201ENST00000296051 NEUROD1Q13562 356 aa19.58■□□□□ 0.72
HPS3-201ENST00000296051 POLR3GLQ9BT43 218 aa19.49■□□□□ 0.71
HPS3-201ENST00000296051 BCANQ96GW7 911 aa19.48■□□□□ 0.71
HPS3-201ENST00000296051 DCAF1Q9Y4B6 1507 aa19.4■□□□□ 0.7
HPS3-201ENST00000296051 ZNF316A6NFI3 1004 aaPredicted RBP19.4■□□□□ 0.7
HPS3-201ENST00000296051 CNGB1Q14028 1251 aaPredicted RBP19.37■□□□□ 0.69
HPS3-201ENST00000296051 ARID3CA6NKF2 412 aa19.3■□□□□ 0.68
HPS3-201ENST00000296051 SLC4A1APQ9BWU0 796 aaKnown RBP19.28■□□□□ 0.68
HPS3-201ENST00000296051 FAM50AQ14320 339 aaKnown RBP19.25■□□□□ 0.67
HPS3-201ENST00000296051 P3H3Q8IVL6 736 aa19.21■□□□□ 0.67
HPS3-201ENST00000296051 TRIM52Q96A61 297 aa19.14■□□□□ 0.65
HPS3-201ENST00000296051 MIER1Q8N108 512 aa19.11■□□□□ 0.65
HPS3-201ENST00000296051 SCRIBQ14160 1630 aa19.08■□□□□ 0.64
HPS3-201ENST00000296051 ZCCHC6Q5VYS8 1495 aaKnown RBP19.05■□□□□ 0.64
HPS3-201ENST00000296051 PLPPR3Q6T4P5 718 aa19.04■□□□□ 0.64
HPS3-201ENST00000296051 ZNF777Q9ULD5 760 aaPredicted RBP18.98■□□□□ 0.63
HPS3-201ENST00000296051 NPM1P06748 294 aaKnown RBP eCLIP18.98■□□□□ 0.63
HPS3-201ENST00000296051 CSRNP3Q8WYN3 585 aa18.97■□□□□ 0.63
HPS3-201ENST00000296051 ZNF326Q5BKZ1 582 aaKnown RBP18.95■□□□□ 0.62
HPS3-201ENST00000296051 FKBP8Q14318 412 aa18.93■□□□□ 0.62
HPS3-201ENST00000296051 ESF1Q9H501 851 aaKnown RBP18.9■□□□□ 0.62
HPS3-201ENST00000296051 ANP32CO43423 234 aa18.83■□□□□ 0.61
HPS3-201ENST00000296051 DDX10Q13206 875 aaKnown RBP18.81■□□□□ 0.6
HPS3-201ENST00000296051 CDK11AQ9UQ88 783 aaPredicted RBP18.8■□□□□ 0.6
HPS3-201ENST00000296051 CCDC180Q9P1Z9 1646 aa18.8■□□□□ 0.6
HPS3-201ENST00000296051 CHMP7Q8WUX9 453 aaPredicted RBP18.78■□□□□ 0.6
HPS3-201ENST00000296051 RTL5Q5HYW3 569 aaPredicted RBP18.76■□□□□ 0.59
HPS3-201ENST00000296051 HIRIP3Q9BW71 556 aaPredicted RBP18.74■□□□□ 0.59
HPS3-201ENST00000296051 DAXXQ9UER7 740 aaPredicted RBP18.71■□□□□ 0.59
HPS3-201ENST00000296051 CHGAP10645 457 aaKnown RBP18.7■□□□□ 0.58
HPS3-201ENST00000296051 STAG3Q9UJ98 1225 aa18.69■□□□□ 0.58
HPS3-201ENST00000296051 IRX6P78412 446 aaPredicted RBP18.66■□□□□ 0.58
HPS3-201ENST00000296051 SLC24A1O60721 1099 aa18.65■□□□□ 0.58
HPS3-201ENST00000296051 RSF1Q96T23 1441 aaPredicted RBP18.61■□□□□ 0.57
HPS3-201ENST00000296051 HNRNPUQ00839 825 aaKnown RBP eCLIP18.6■□□□□ 0.57
HPS3-201ENST00000296051 KCNH8Q96L42 1107 aa18.56■□□□□ 0.56
HPS3-201ENST00000296051 SUPT16HQ9Y5B9 1047 aaKnown RBP18.54■□□□□ 0.56
HPS3-201ENST00000296051 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.53■□□□□ 0.56
HPS3-201ENST00000296051 CLSPNQ9HAW4 1339 aa18.53■□□□□ 0.56
HPS3-201ENST00000296051 ANP32EQ9BTT0 268 aa18.53■□□□□ 0.56
HPS3-201ENST00000296051 CEP162Q5TB80 1403 aa18.52■□□□□ 0.56
HPS3-201ENST00000296051 NPM2Q86SE8 214 aaKnown RBP18.51■□□□□ 0.55
HPS3-201ENST00000296051 NBR1Q14596 966 aa18.5■□□□□ 0.55
HPS3-201ENST00000296051 RB1CC1Q8TDY2 1594 aa18.5■□□□□ 0.55
HPS3-201ENST00000296051 FAM9BQ8IZU0 186 aa18.49■□□□□ 0.55
HPS3-201ENST00000296051 CHIC2Q9UKJ5 165 aa18.49■□□□□ 0.55
HPS3-201ENST00000296051 SENP3Q9H4L4 574 aaPredicted RBP18.46■□□□□ 0.54
HPS3-201ENST00000296051 SENP3-EIF4A1A0A087X0R7 540 aa18.43■□□□□ 0.54
HPS3-201ENST00000296051 TSPY4P0CV99 314 aa18.42■□□□□ 0.54
HPS3-201ENST00000296051 TSPY10P0CW01 314 aa18.42■□□□□ 0.54
HPS3-201ENST00000296051 TRHP20396 242 aaPredicted RBP18.41■□□□□ 0.54
HPS3-201ENST00000296051 BCL11AQ9H165 835 aa18.41■□□□□ 0.54
HPS3-201ENST00000296051 ERCC6Q03468 1493 aa18.4■□□□□ 0.54
HPS3-201ENST00000296051 CLIP1P30622 1438 aa18.39■□□□□ 0.53
HPS3-201ENST00000296051 ANP32AP39687 249 aaKnown RBP18.37■□□□□ 0.53
HPS3-201ENST00000296051 CECR2Q9BXF3 1484 aa18.36■□□□□ 0.53
HPS3-201ENST00000296051 ARID4BQ4LE39 1312 aaPredicted RBP18.36■□□□□ 0.53
HPS3-201ENST00000296051 SALL2Q9Y467 1007 aaPredicted RBP18.36■□□□□ 0.53
HPS3-201ENST00000296051 NEFMP07197 916 aa18.35■□□□□ 0.53
HPS3-201ENST00000296051 TONSLQ96HA7 1378 aa18.35■□□□□ 0.53
HPS3-201ENST00000296051 PLEKHG5O94827 1062 aa18.32■□□□□ 0.52
HPS3-201ENST00000296051 PLEKHD1A6NEE1 506 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms