RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 DCAF8L2P0C7V8 631 aa22.07■■□□□ 1.12
SDC3-201ENST00000336798 EHMT2Q96KQ7 1210 aa20.73■□□□□ 0.91
SDC3-201ENST00000336798 SUPT5HO00267 1087 aaKnown RBP20.71■□□□□ 0.91
SDC3-201ENST00000336798 SHROOM4Q9ULL8 1493 aa20.24■□□□□ 0.83
SDC3-201ENST00000336798 PELP1Q8IZL8 1130 aaKnown RBP20.06■□□□□ 0.8
SDC3-201ENST00000336798 TTBK1Q5TCY1 1321 aaPredicted RBP19.98■□□□□ 0.79
SDC3-201ENST00000336798 APLP2Q06481 763 aa19.87■□□□□ 0.77
SDC3-201ENST00000336798 MYT1Q01538 1121 aa19.81■□□□□ 0.76
SDC3-201ENST00000336798 FAM9AQ8IZU1 332 aaPredicted RBP19.75■□□□□ 0.75
SDC3-201ENST00000336798 RANGAP1P46060 587 aaPredicted RBP19.7■□□□□ 0.74
SDC3-201ENST00000336798 ERICH6Q7L0X2 663 aa19.55■□□□□ 0.72
SDC3-201ENST00000336798 PCGF6Q9BYE7 350 aa19.5■□□□□ 0.71
SDC3-201ENST00000336798 ATP1B4Q9UN42 357 aaPredicted RBP19.49■□□□□ 0.71
SDC3-201ENST00000336798 CCER1Q8TC90 406 aaPredicted RBP19.19■□□□□ 0.66
SDC3-201ENST00000336798 NISCHQ9Y2I1 1504 aa19.17■□□□□ 0.66
SDC3-201ENST00000336798 YTHDC1Q96MU7 727 aaKnown RBP19.15■□□□□ 0.66
SDC3-201ENST00000336798 CENPBP07199 599 aaPredicted RBP19.13■□□□□ 0.65
SDC3-201ENST00000336798 UBTFP17480 764 aaKnown RBP18.98■□□□□ 0.63
SDC3-201ENST00000336798 PPARGC1BQ86YN6 1023 aaKnown RBP18.96■□□□□ 0.63
SDC3-201ENST00000336798 TRIM41Q8WV44 630 aa18.95■□□□□ 0.62
SDC3-201ENST00000336798 NEFLP07196 543 aa18.95■□□□□ 0.62
SDC3-201ENST00000336798 MYT1LQ9UL68 1186 aa18.85■□□□□ 0.61
SDC3-201ENST00000336798 POLR3GLQ9BT43 218 aa18.84■□□□□ 0.61
SDC3-201ENST00000336798 CNGB1Q14028 1251 aaPredicted RBP18.81■□□□□ 0.6
SDC3-201ENST00000336798 ZEB1P37275 1124 aaPredicted RBP18.78■□□□□ 0.6
SDC3-201ENST00000336798 CHIC1Q5VXU3 224 aa18.77■□□□□ 0.6
SDC3-201ENST00000336798 ITGAEP38570 1179 aa18.7■□□□□ 0.58
SDC3-201ENST00000336798 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.66■□□□□ 0.58
SDC3-201ENST00000336798 HNRNPUL2Q1KMD3 747 aaKnown RBP18.66■□□□□ 0.58
SDC3-201ENST00000336798 DAXXQ9UER7 740 aaPredicted RBP18.64■□□□□ 0.57
SDC3-201ENST00000336798 SLC4A1APQ9BWU0 796 aaKnown RBP18.55■□□□□ 0.56
SDC3-201ENST00000336798 CLSPNQ9HAW4 1339 aa18.26■□□□□ 0.51
SDC3-201ENST00000336798 ZNF316A6NFI3 1004 aaPredicted RBP18.2■□□□□ 0.5
SDC3-201ENST00000336798 TRIM26Q12899 539 aaPredicted RBP18.19■□□□□ 0.5
SDC3-201ENST00000336798 HRCP23327 699 aa18.15■□□□□ 0.5
SDC3-201ENST00000336798 LOC105371045A0A1W2PR82 267 aa18.13■□□□□ 0.49
SDC3-201ENST00000336798 BCL11AQ9H165 835 aa18.13■□□□□ 0.49
SDC3-201ENST00000336798 RTL5Q5HYW3 569 aaPredicted RBP18.05■□□□□ 0.48
SDC3-201ENST00000336798 SLC24A1O60721 1099 aa18.04■□□□□ 0.48
SDC3-201ENST00000336798 FAM50AQ14320 339 aaKnown RBP18.01■□□□□ 0.47
SDC3-201ENST00000336798 TRIM52Q96A61 297 aa17.99■□□□□ 0.47
SDC3-201ENST00000336798 BCANQ96GW7 911 aa17.98■□□□□ 0.47
SDC3-201ENST00000336798 NEUROD1Q13562 356 aa17.96■□□□□ 0.47
SDC3-201ENST00000336798 ZNF326Q5BKZ1 582 aaKnown RBP17.95■□□□□ 0.46
SDC3-201ENST00000336798 DIEXFQ68CQ4 756 aaKnown RBP17.83■□□□□ 0.45
SDC3-201ENST00000336798 ZBTB47Q9UFB7 747 aaPredicted RBP17.82■□□□□ 0.44
SDC3-201ENST00000336798 FBLN2P98095 1184 aa17.75■□□□□ 0.43
SDC3-201ENST00000336798 CANXP27824 592 aaKnown RBP17.73■□□□□ 0.43
SDC3-201ENST00000336798 ARID3CA6NKF2 412 aa17.7■□□□□ 0.42
SDC3-201ENST00000336798 PLPPR3Q6T4P5 718 aa17.66■□□□□ 0.42
SDC3-201ENST00000336798 GTF3C3Q9Y5Q9 886 aa17.65■□□□□ 0.42
SDC3-201ENST00000336798 ANP32CO43423 234 aa17.61■□□□□ 0.41
SDC3-201ENST00000336798 PABPN1Q86U42 306 aaKnown RBP eCLIP17.61■□□□□ 0.41
SDC3-201ENST00000336798 CDK11AQ9UQ88 783 aaPredicted RBP17.59■□□□□ 0.41
SDC3-201ENST00000336798 EIF5BO60841 1220 aaKnown RBP17.56■□□□□ 0.4
SDC3-201ENST00000336798 NPM2Q86SE8 214 aaKnown RBP17.55■□□□□ 0.4
SDC3-201ENST00000336798 NEFMP07197 916 aa17.53■□□□□ 0.4
SDC3-201ENST00000336798 P3H3Q8IVL6 736 aa17.52■□□□□ 0.39
SDC3-201ENST00000336798 ZNF777Q9ULD5 760 aaPredicted RBP17.47■□□□□ 0.39
SDC3-201ENST00000336798 CHGAP10645 457 aaKnown RBP17.39■□□□□ 0.37
SDC3-201ENST00000336798 GLIPR1L2Q4G1C9 344 aa17.37■□□□□ 0.37
SDC3-201ENST00000336798 ANP32AP39687 249 aaKnown RBP17.33■□□□□ 0.36
SDC3-201ENST00000336798 SALL2Q9Y467 1007 aaPredicted RBP17.33■□□□□ 0.36
SDC3-201ENST00000336798 ESF1Q9H501 851 aaKnown RBP17.32■□□□□ 0.36
SDC3-201ENST00000336798 STAG3Q9UJ98 1225 aa17.31■□□□□ 0.36
SDC3-201ENST00000336798 HSP90AA1P07900 732 aaKnown RBP17.31■□□□□ 0.36
SDC3-201ENST00000336798 ARXQ96QS3 562 aa17.27■□□□□ 0.35
SDC3-201ENST00000336798 PLEKHG5O94827 1062 aa17.27■□□□□ 0.35
SDC3-201ENST00000336798 A0A0G2JS52 829 aa17.26■□□□□ 0.35
SDC3-201ENST00000336798 SCAF1Q9H7N4 1312 aaKnown RBP17.26■□□□□ 0.35
SDC3-201ENST00000336798 ACIN1Q9UKV3 1341 aaKnown RBP17.26■□□□□ 0.35
SDC3-201ENST00000336798 SENP3Q9H4L4 574 aaPredicted RBP17.25■□□□□ 0.35
SDC3-201ENST00000336798 ABCC9O60706 1549 aa17.25■□□□□ 0.35
SDC3-201ENST00000336798 ANP32BQ92688 251 aaKnown RBP17.2■□□□□ 0.34
SDC3-201ENST00000336798 FAM9BQ8IZU0 186 aa17.18■□□□□ 0.34
SDC3-201ENST00000336798 FKBP8Q14318 412 aa17.17■□□□□ 0.34
SDC3-201ENST00000336798 ZBTB7CA1YPR0 619 aa17.14■□□□□ 0.33
SDC3-201ENST00000336798 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.12■□□□□ 0.33
SDC3-201ENST00000336798 NBR1Q14596 966 aa17.09■□□□□ 0.33
SDC3-201ENST00000336798 HNRNPUQ00839 825 aaKnown RBP eCLIP17.09■□□□□ 0.33
SDC3-201ENST00000336798 UPF2Q9HAU5 1272 aaKnown RBP17.08■□□□□ 0.33
SDC3-201ENST00000336798 CHIC2Q9UKJ5 165 aa17.03■□□□□ 0.32
SDC3-201ENST00000336798 DDX10Q13206 875 aaKnown RBP17.03■□□□□ 0.32
SDC3-201ENST00000336798 KDM2AQ9Y2K7 1162 aa17.01■□□□□ 0.31
SDC3-201ENST00000336798 TONSLQ96HA7 1378 aa16.99■□□□□ 0.31
SDC3-201ENST00000336798 C14orf37Q86TY3 774 aa16.99■□□□□ 0.31
SDC3-201ENST00000336798 IRX6P78412 446 aaPredicted RBP16.98■□□□□ 0.31
SDC3-201ENST00000336798 NPM1P06748 294 aaKnown RBP eCLIP16.97■□□□□ 0.31
SDC3-201ENST00000336798 TULP1O00294 542 aaPredicted RBP16.96■□□□□ 0.31
SDC3-201ENST00000336798 CDK11BP21127 795 aaKnown RBP16.94■□□□□ 0.3
SDC3-201ENST00000336798 TMC1Q8TDI8 760 aa16.94■□□□□ 0.3
SDC3-201ENST00000336798 SENP3-EIF4A1A0A087X0R7 540 aa16.93■□□□□ 0.3
SDC3-201ENST00000336798 WDR43Q15061 677 aaKnown RBP eCLIP16.93■□□□□ 0.3
SDC3-201ENST00000336798 CCDC136Q96JN2 1154 aa16.93■□□□□ 0.3
SDC3-201ENST00000336798 TPRNQ4KMQ1 711 aa16.92■□□□□ 0.3
SDC3-201ENST00000336798 HIRIP3Q9BW71 556 aaPredicted RBP16.91■□□□□ 0.3
SDC3-201ENST00000336798 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.9■□□□□ 0.3
SDC3-201ENST00000336798 CSRNP3Q8WYN3 585 aa16.89■□□□□ 0.29
SDC3-201ENST00000336798 ANP32EQ9BTT0 268 aa16.88■□□□□ 0.29
SDC3-201ENST00000336798 TAOK2Q9UL54 1235 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms