Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USE1Q9NZ43 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USE1Q9NZ43 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USE1Q9NZ43 KRT18P10-201ENST00000388836 1287 ntBASIC21.04■□□□□ 0.96
USE1Q9NZ43 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
USE1Q9NZ43 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
USE1Q9NZ43 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USE1Q9NZ43 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USE1Q9NZ43 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
USE1Q9NZ43 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.03■□□□□ 0.96
USE1Q9NZ43 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
USE1Q9NZ43 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.03■□□□□ 0.96
USE1Q9NZ43 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.03■□□□□ 0.96
USE1Q9NZ43 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USE1Q9NZ43 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USE1Q9NZ43 RNF166-209ENST00000567844 633 ntTSL 5 BASIC21.03■□□□□ 0.96
USE1Q9NZ43 CR559946.2-201ENST00000623684 991 ntBASIC21.03■□□□□ 0.96
USE1Q9NZ43 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
USE1Q9NZ43 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USE1Q9NZ43 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USE1Q9NZ43 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USE1Q9NZ43 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
USE1Q9NZ43 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USE1Q9NZ43 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USE1Q9NZ43 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.03■□□□□ 0.96
USE1Q9NZ43 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.02■□□□□ 0.96
USE1Q9NZ43 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USE1Q9NZ43 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
USE1Q9NZ43 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.02■□□□□ 0.96
USE1Q9NZ43 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.02■□□□□ 0.96
USE1Q9NZ43 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USE1Q9NZ43 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USE1Q9NZ43 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
USE1Q9NZ43 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USE1Q9NZ43 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
USE1Q9NZ43 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
USE1Q9NZ43 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
USE1Q9NZ43 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USE1Q9NZ43 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
USE1Q9NZ43 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USE1Q9NZ43 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
USE1Q9NZ43 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
USE1Q9NZ43 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
USE1Q9NZ43 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USE1Q9NZ43 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USE1Q9NZ43 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.01■□□□□ 0.95
USE1Q9NZ43 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.01■□□□□ 0.95
USE1Q9NZ43 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
USE1Q9NZ43 AC242852.2-201ENST00000615738 1807 ntBASIC21.01■□□□□ 0.95
USE1Q9NZ43 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
USE1Q9NZ43 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.01■□□□□ 0.95
USE1Q9NZ43 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
USE1Q9NZ43 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.01■□□□□ 0.95
USE1Q9NZ43 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21■□□□□ 0.95
USE1Q9NZ43 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21■□□□□ 0.95
USE1Q9NZ43 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
USE1Q9NZ43 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
USE1Q9NZ43 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21■□□□□ 0.95
USE1Q9NZ43 AC060814.1-201ENST00000554326 538 ntBASIC21■□□□□ 0.95
USE1Q9NZ43 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
USE1Q9NZ43 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USE1Q9NZ43 AC007375.3-201ENST00000600936 2314 ntBASIC21■□□□□ 0.95
USE1Q9NZ43 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USE1Q9NZ43 H19-210ENST00000439725 1929 ntTSL 2 BASIC21■□□□□ 0.95
USE1Q9NZ43 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USE1Q9NZ43 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USE1Q9NZ43 ESRRAP2-201ENST00000418437 1549 ntBASIC20.99■□□□□ 0.95
USE1Q9NZ43 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USE1Q9NZ43 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.99■□□□□ 0.95
USE1Q9NZ43 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.99■□□□□ 0.95
USE1Q9NZ43 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USE1Q9NZ43 RP9P-202ENST00000450133 1212 ntBASIC20.99■□□□□ 0.95
USE1Q9NZ43 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USE1Q9NZ43 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
USE1Q9NZ43 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USE1Q9NZ43 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USE1Q9NZ43 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USE1Q9NZ43 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USE1Q9NZ43 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.98■□□□□ 0.95
USE1Q9NZ43 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USE1Q9NZ43 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USE1Q9NZ43 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USE1Q9NZ43 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USE1Q9NZ43 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
USE1Q9NZ43 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USE1Q9NZ43 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
USE1Q9NZ43 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
USE1Q9NZ43 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.98■□□□□ 0.95
USE1Q9NZ43 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.98■□□□□ 0.95
USE1Q9NZ43 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.98■□□□□ 0.95
USE1Q9NZ43 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USE1Q9NZ43 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.97■□□□□ 0.95
USE1Q9NZ43 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USE1Q9NZ43 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.97■□□□□ 0.95
USE1Q9NZ43 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USE1Q9NZ43 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.97■□□□□ 0.95
USE1Q9NZ43 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USE1Q9NZ43 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USE1Q9NZ43 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
USE1Q9NZ43 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms