Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AF131216.4-201ENST00000638924 1588 ntBASIC22■■□□□ 1.11
FOXA1P55317 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22■■□□□ 1.11
FOXA1P55317 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
FOXA1P55317 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22■■□□□ 1.11
FOXA1P55317 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
FOXA1P55317 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22■■□□□ 1.11
FOXA1P55317 BHLHE23-202ENST00000612929 1109 ntBASIC22■■□□□ 1.11
FOXA1P55317 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
FOXA1P55317 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22■■□□□ 1.11
FOXA1P55317 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22■■□□□ 1.11
FOXA1P55317 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
FOXA1P55317 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.99■■□□□ 1.11
FOXA1P55317 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
FOXA1P55317 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.99■■□□□ 1.11
FOXA1P55317 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
FOXA1P55317 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
FOXA1P55317 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.99■■□□□ 1.11
FOXA1P55317 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
FOXA1P55317 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.98■■□□□ 1.11
FOXA1P55317 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
FOXA1P55317 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
FOXA1P55317 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
FOXA1P55317 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.98■■□□□ 1.11
FOXA1P55317 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.98■■□□□ 1.11
FOXA1P55317 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
FOXA1P55317 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
FOXA1P55317 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
FOXA1P55317 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
FOXA1P55317 AC233723.2-201ENST00000623798 2106 ntBASIC21.98■■□□□ 1.11
FOXA1P55317 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
FOXA1P55317 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.98■■□□□ 1.11
FOXA1P55317 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXA1P55317 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXA1P55317 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.97■■□□□ 1.11
FOXA1P55317 AC010980.1-201ENST00000587192 1142 ntBASIC21.97■■□□□ 1.11
FOXA1P55317 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXA1P55317 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
FOXA1P55317 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXA1P55317 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXA1P55317 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXA1P55317 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
FOXA1P55317 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXA1P55317 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXA1P55317 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.96■■□□□ 1.11
FOXA1P55317 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXA1P55317 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.96■■□□□ 1.11
FOXA1P55317 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
FOXA1P55317 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.96■■□□□ 1.11
FOXA1P55317 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
FOXA1P55317 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
FOXA1P55317 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXA1P55317 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXA1P55317 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
FOXA1P55317 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
FOXA1P55317 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
FOXA1P55317 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
FOXA1P55317 MIR4281-201ENST00000580852 62 ntBASIC21.95■■□□□ 1.1
FOXA1P55317 AL117328.2-201ENST00000624617 1940 ntBASIC21.95■■□□□ 1.1
FOXA1P55317 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
FOXA1P55317 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
FOXA1P55317 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
FOXA1P55317 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
FOXA1P55317 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.94■■□□□ 1.1
FOXA1P55317 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
FOXA1P55317 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
FOXA1P55317 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
FOXA1P55317 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
FOXA1P55317 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
FOXA1P55317 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
FOXA1P55317 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
FOXA1P55317 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.94■■□□□ 1.1
FOXA1P55317 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.94■■□□□ 1.1
FOXA1P55317 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
FOXA1P55317 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
FOXA1P55317 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
FOXA1P55317 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
FOXA1P55317 TSPY13P-201ENST00000338964 914 ntBASIC21.93■■□□□ 1.1
FOXA1P55317 KRT18P24-201ENST00000344739 1156 ntBASIC21.93■■□□□ 1.1
FOXA1P55317 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
FOXA1P55317 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
FOXA1P55317 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.93■■□□□ 1.1
FOXA1P55317 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
FOXA1P55317 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
FOXA1P55317 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
FOXA1P55317 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
FOXA1P55317 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
FOXA1P55317 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
FOXA1P55317 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
FOXA1P55317 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
FOXA1P55317 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
FOXA1P55317 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
FOXA1P55317 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
FOXA1P55317 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
FOXA1P55317 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.92■■□□□ 1.1
FOXA1P55317 THA1P-201ENST00000590384 1145 ntBASIC21.92■■□□□ 1.1
FOXA1P55317 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
FOXA1P55317 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
FOXA1P55317 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.92■■□□□ 1.1
FOXA1P55317 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
FOXA1P55317 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms