Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC16.36■□□□□ 0.21
CCNA1P78396 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.36■□□□□ 0.21
CCNA1P78396 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CCNA1P78396 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
CCNA1P78396 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC16.36■□□□□ 0.21
CCNA1P78396 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.36■□□□□ 0.21
CCNA1P78396 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 AC105917.1-201ENST00000506637 2539 ntBASIC16.36■□□□□ 0.21
CCNA1P78396 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCNA1P78396 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC16.35■□□□□ 0.21
CCNA1P78396 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.35■□□□□ 0.21
CCNA1P78396 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
CCNA1P78396 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 NHP2-202ENST00000314397 599 ntTSL 2 BASIC16.35■□□□□ 0.21
CCNA1P78396 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC16.35■□□□□ 0.21
CCNA1P78396 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC16.35■□□□□ 0.21
CCNA1P78396 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC16.35■□□□□ 0.21
CCNA1P78396 GRPEL2P1-201ENST00000453145 339 ntBASIC16.35■□□□□ 0.21
CCNA1P78396 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC16.35■□□□□ 0.21
CCNA1P78396 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC16.35■□□□□ 0.21
CCNA1P78396 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC16.35■□□□□ 0.21
CCNA1P78396 AP005264.5-201ENST00000590066 467 ntBASIC16.35■□□□□ 0.21
CCNA1P78396 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
CCNA1P78396 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.35■□□□□ 0.21
CCNA1P78396 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.35■□□□□ 0.21
CCNA1P78396 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CCNA1P78396 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC16.35■□□□□ 0.21
CCNA1P78396 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.35■□□□□ 0.21
CCNA1P78396 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC16.35■□□□□ 0.21
CCNA1P78396 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.35■□□□□ 0.21
CCNA1P78396 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.35■□□□□ 0.21
CCNA1P78396 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCNA1P78396 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.35■□□□□ 0.21
CCNA1P78396 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC16.35■□□□□ 0.21
CCNA1P78396 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.34■□□□□ 0.21
CCNA1P78396 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCNA1P78396 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CCNA1P78396 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCNA1P78396 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCNA1P78396 MYADML-201ENST00000474610 2147 ntBASIC16.34■□□□□ 0.21
CCNA1P78396 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.34■□□□□ 0.21
CCNA1P78396 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.34■□□□□ 0.21
CCNA1P78396 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCNA1P78396 CCT8L1P-201ENST00000465400 1674 ntBASIC16.34■□□□□ 0.21
CCNA1P78396 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCNA1P78396 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCNA1P78396 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCNA1P78396 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC16.34■□□□□ 0.21
CCNA1P78396 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC16.34■□□□□ 0.21
CCNA1P78396 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.34■□□□□ 0.21
CCNA1P78396 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCNA1P78396 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCNA1P78396 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCNA1P78396 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCNA1P78396 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.34■□□□□ 0.21
CCNA1P78396 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC16.34■□□□□ 0.21
CCNA1P78396 HCG27-204ENST00000424675 895 ntTSL 3 BASIC16.34■□□□□ 0.21
CCNA1P78396 IDS-203ENST00000428056 1213 ntTSL 2 BASIC16.34■□□□□ 0.21
CCNA1P78396 RN7SL396P-201ENST00000471086 295 ntBASIC16.34■□□□□ 0.21
CCNA1P78396 RN7SL564P-201ENST00000496309 250 ntBASIC16.34■□□□□ 0.21
CCNA1P78396 AC026410.1-201ENST00000507366 1101 ntBASIC16.34■□□□□ 0.21
CCNA1P78396 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCNA1P78396 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC16.34■□□□□ 0.21
CCNA1P78396 SNORD3B-1-201ENST00000577988 758 ntBASIC16.34■□□□□ 0.21
CCNA1P78396 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC16.34■□□□□ 0.21
CCNA1P78396 RNF146-211ENST00000609447 607 ntTSL 4 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms