RNA–Protein interactions for RNA: ENST00000588937.5

MBD1-217, Transcript of methyl-CpG binding domain protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MBD1, Length 1,761 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD1-217ENST00000588937 NISCHQ9Y2I1 1504 aa33.24■■■□□ 2.91
MBD1-217ENST00000588937 CCDC180Q9P1Z9 1646 aa29.13■■■□□ 2.25
MBD1-217ENST00000588937 ZCCHC6Q5VYS8 1495 aaKnown RBP27.94■■■□□ 2.06
MBD1-217ENST00000588937 DCAF1Q9Y4B6 1507 aa27.61■■■□□ 2.01
MBD1-217ENST00000588937 ABCC9O60706 1549 aa27.44■■□□□ 1.98
MBD1-217ENST00000588937 SHROOM4Q9ULL8 1493 aa27.43■■□□□ 1.98
MBD1-217ENST00000588937 MYO15BQ96JP2 1530 aa27.37■■□□□ 1.97
MBD1-217ENST00000588937 DCAF8L2P0C7V8 631 aa27.23■■□□□ 1.95
MBD1-217ENST00000588937 NACADO15069 1562 aa27.14■■□□□ 1.94
MBD1-217ENST00000588937 RB1CC1Q8TDY2 1594 aa26.89■■□□□ 1.9
MBD1-217ENST00000588937 SUPT5HO00267 1087 aaKnown RBP26.7■■□□□ 1.86
MBD1-217ENST00000588937 SCRIBQ14160 1630 aa26.57■■□□□ 1.84
MBD1-217ENST00000588937 UNC13AQ9UPW8 1703 aa26.36■■□□□ 1.81
MBD1-217ENST00000588937 BICRAQ9NZM4 1560 aa26.09■■□□□ 1.77
MBD1-217ENST00000588937 RSF1Q96T23 1441 aaPredicted RBP25.91■■□□□ 1.74
MBD1-217ENST00000588937 CHIC1Q5VXU3 224 aa25.84■■□□□ 1.73
MBD1-217ENST00000588937 PABPN1Q86U42 306 aaKnown RBP eCLIP25.79■■□□□ 1.72
MBD1-217ENST00000588937 CECR2Q9BXF3 1484 aa25.75■■□□□ 1.71
MBD1-217ENST00000588937 BAZ1AQ9NRL2 1556 aaPredicted RBP25.68■■□□□ 1.7
MBD1-217ENST00000588937 MROH2BQ7Z745 1585 aa25.61■■□□□ 1.69
MBD1-217ENST00000588937 SMARCA4P51532 1647 aa25.57■■□□□ 1.68
MBD1-217ENST00000588937 WIZO95785 1651 aa25.45■■□□□ 1.66
MBD1-217ENST00000588937 PEG3Q9GZU2 1588 aa25.37■■□□□ 1.65
MBD1-217ENST00000588937 EIF4G1Q04637 1599 aaKnown RBP25.29■■□□□ 1.64
MBD1-217ENST00000588937 TOP2AP11388 1531 aaKnown RBP25.2■■□□□ 1.62
MBD1-217ENST00000588937 SMARCA2P51531 1590 aa25.2■■□□□ 1.62
MBD1-217ENST00000588937 ATAD2BQ9ULI0 1458 aa25.18■■□□□ 1.62
MBD1-217ENST00000588937 TRIM41Q8WV44 630 aa25.09■■□□□ 1.61
MBD1-217ENST00000588937 NCAPD3P42695 1498 aa25.05■■□□□ 1.6
MBD1-217ENST00000588937 HMGXB3Q12766 1538 aa25.01■■□□□ 1.59
MBD1-217ENST00000588937 BAZ1BQ9UIG0 1483 aaKnown RBP24.99■■□□□ 1.59
MBD1-217ENST00000588937 CCDC88BA6NC98 1476 aa24.95■■□□□ 1.58
MBD1-217ENST00000588937 CC2D2AQ9P2K1 1620 aa24.92■■□□□ 1.58
MBD1-217ENST00000588937 LOC105371045A0A1W2PR82 267 aa24.88■■□□□ 1.57
MBD1-217ENST00000588937 FAM9AQ8IZU1 332 aaPredicted RBP24.62■■□□□ 1.53
MBD1-217ENST00000588937 ABCC8Q09428 1581 aa24.6■■□□□ 1.53
MBD1-217ENST00000588937 DNAJC5BQ9UF47 199 aa24.58■■□□□ 1.53
MBD1-217ENST00000588937 CFTRP13569 1480 aa24.43■■□□□ 1.5
MBD1-217ENST00000588937 WRNQ14191 1432 aaPredicted RBP eCLIP24.4■■□□□ 1.5
MBD1-217ENST00000588937 EEA1Q15075 1411 aa24.39■■□□□ 1.5
MBD1-217ENST00000588937 PCGF6Q9BYE7 350 aa24.38■■□□□ 1.49
MBD1-217ENST00000588937 PRDM2Q13029 1718 aa24.34■■□□□ 1.49
MBD1-217ENST00000588937 CADPSQ9ULU8 1353 aa24.34■■□□□ 1.49
MBD1-217ENST00000588937 TRIM26Q12899 539 aaPredicted RBP24.26■■□□□ 1.47
MBD1-217ENST00000588937 SOGA1O94964 1423 aa24.26■■□□□ 1.47
MBD1-217ENST00000588937 SYNJ1O43426 1573 aa24.25■■□□□ 1.47
MBD1-217ENST00000588937 EHMT2Q96KQ7 1210 aa24.25■■□□□ 1.47
MBD1-217ENST00000588937 LAMC3Q9Y6N6 1575 aa24.21■■□□□ 1.47
MBD1-217ENST00000588937 CSRNP3Q8WYN3 585 aa24.18■■□□□ 1.46
MBD1-217ENST00000588937 HRCP23327 699 aa24.14■■□□□ 1.46
MBD1-217ENST00000588937 TOP2BQ02880 1626 aa24.13■■□□□ 1.45
MBD1-217ENST00000588937 RUSC2Q8N2Y8 1516 aa24.11■■□□□ 1.45
MBD1-217ENST00000588937 BIVM-ERCC5R4GMW8 1640 aa24.1■■□□□ 1.45
MBD1-217ENST00000588937 TNIKQ9UKE5 1360 aa24.09■■□□□ 1.45
MBD1-217ENST00000588937 NESP48681 1621 aa24.07■■□□□ 1.44
MBD1-217ENST00000588937 GOLGA3Q08378 1498 aa24.05■■□□□ 1.44
MBD1-217ENST00000588937 FANCD2Q9BXW9 1451 aa24.03■■□□□ 1.44
MBD1-217ENST00000588937 KIF21BO75037 1637 aa24.01■■□□□ 1.43
MBD1-217ENST00000588937 CEP164Q9UPV0 1460 aa24■■□□□ 1.43
MBD1-217ENST00000588937 CEP162Q5TB80 1403 aa23.99■■□□□ 1.43
MBD1-217ENST00000588937 PDS5BQ9NTI5 1447 aa23.98■■□□□ 1.43
MBD1-217ENST00000588937 CUX1P39880 1505 aa23.97■■□□□ 1.43
MBD1-217ENST00000588937 UBTFP17480 764 aaKnown RBP23.94■■□□□ 1.42
MBD1-217ENST00000588937 KIF21AQ7Z4S6 1674 aa23.84■■□□□ 1.41
MBD1-217ENST00000588937 DNMBPQ6XZF7 1577 aa23.84■■□□□ 1.41
MBD1-217ENST00000588937 TOPBP1Q92547 1522 aa23.77■■□□□ 1.4
MBD1-217ENST00000588937 KIF27Q86VH2 1401 aa23.75■■□□□ 1.39
MBD1-217ENST00000588937 ERICH3Q5RHP9 1530 aa23.75■■□□□ 1.39
MBD1-217ENST00000588937 RAPGEF2Q9Y4G8 1499 aa23.74■■□□□ 1.39
MBD1-217ENST00000588937 URB2Q14146 1524 aaKnown RBP23.74■■□□□ 1.39
MBD1-217ENST00000588937 FGD5Q6ZNL6 1462 aa23.71■■□□□ 1.39
MBD1-217ENST00000588937 PRXQ9BXM0 1461 aa23.69■■□□□ 1.38
MBD1-217ENST00000588937 CLIP1P30622 1438 aa23.68■■□□□ 1.38
MBD1-217ENST00000588937 MRC2Q9UBG0 1479 aa23.66■■□□□ 1.38
MBD1-217ENST00000588937 PPARGC1BQ86YN6 1023 aaKnown RBP23.65■■□□□ 1.38
MBD1-217ENST00000588937 POLA1P09884 1462 aaPredicted RBP23.64■■□□□ 1.38
MBD1-217ENST00000588937 ZEB1P37275 1124 aaPredicted RBP23.64■■□□□ 1.37
MBD1-217ENST00000588937 WDR62O43379 1518 aa23.58■■□□□ 1.37
MBD1-217ENST00000588937 ABCA10Q8WWZ4 1543 aa23.57■■□□□ 1.36
MBD1-217ENST00000588937 VPS8Q8N3P4 1428 aa23.56■■□□□ 1.36
MBD1-217ENST00000588937 ERCC6Q03468 1493 aa23.55■■□□□ 1.36
MBD1-217ENST00000588937 CUX2O14529 1486 aa23.54■■□□□ 1.36
MBD1-217ENST00000588937 THOC2Q8NI27 1593 aaKnown RBP23.53■■□□□ 1.36
MBD1-217ENST00000588937 WDR97A6NE52 1622 aa23.52■■□□□ 1.36
MBD1-217ENST00000588937 RAD54L2Q9Y4B4 1467 aa23.5■■□□□ 1.35
MBD1-217ENST00000588937 TARBP1Q13395 1621 aaKnown RBP23.47■■□□□ 1.35
MBD1-217ENST00000588937 IGF1RP08069 1367 aa23.45■■□□□ 1.34
MBD1-217ENST00000588937 APLP2Q06481 763 aa23.42■■□□□ 1.34
MBD1-217ENST00000588937 ABCA5Q8WWZ7 1642 aa23.39■■□□□ 1.33
MBD1-217ENST00000588937 IFT140Q96RY7 1462 aa23.38■■□□□ 1.33
MBD1-217ENST00000588937 TTBK1Q5TCY1 1321 aaPredicted RBP23.37■■□□□ 1.33
MBD1-217ENST00000588937 CARMIL1Q5VZK9 1371 aa23.37■■□□□ 1.33
MBD1-217ENST00000588937 RANGAP1P46060 587 aaPredicted RBP23.36■■□□□ 1.33
MBD1-217ENST00000588937 ARAP1Q96P48 1450 aa23.35■■□□□ 1.33
MBD1-217ENST00000588937 GAPVD1Q14C86 1478 aa23.3■■□□□ 1.32
MBD1-217ENST00000588937 CUL7Q14999 1698 aa23.28■■□□□ 1.32
MBD1-217ENST00000588937 TDRD9Q8NDG6 1382 aaKnown RBP23.27■■□□□ 1.32
MBD1-217ENST00000588937 ARHGAP35Q9NRY4 1499 aa23.25■■□□□ 1.31
MBD1-217ENST00000588937 CCER1Q8TC90 406 aaPredicted RBP23.21■■□□□ 1.31
MBD1-217ENST00000588937 PBRM1Q86U86 1689 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms