Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 FER1L4-210ENST00000615531 5998 ntBASIC13.17□□□□□ -0.3
FREM3P0C091 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
FREM3P0C091 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
FREM3P0C091 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
FREM3P0C091 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.17□□□□□ -0.3
FREM3P0C091 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.17□□□□□ -0.3
FREM3P0C091 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.17□□□□□ -0.3
FREM3P0C091 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC13.17□□□□□ -0.3
FREM3P0C091 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC13.17□□□□□ -0.3
FREM3P0C091 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC13.17□□□□□ -0.3
FREM3P0C091 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.17□□□□□ -0.3
FREM3P0C091 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.17□□□□□ -0.3
FREM3P0C091 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.17□□□□□ -0.3
FREM3P0C091 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.17□□□□□ -0.3
FREM3P0C091 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC13.17□□□□□ -0.3
FREM3P0C091 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.17□□□□□ -0.3
FREM3P0C091 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
FREM3P0C091 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
FREM3P0C091 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
FREM3P0C091 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 AC090505.1-201ENST00000430515 1834 ntBASIC13.17□□□□□ -0.3
FREM3P0C091 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.17□□□□□ -0.3
FREM3P0C091 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
FREM3P0C091 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC13.16□□□□□ -0.3
FREM3P0C091 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
FREM3P0C091 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.16□□□□□ -0.3
FREM3P0C091 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC13.16□□□□□ -0.3
FREM3P0C091 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC13.16□□□□□ -0.3
FREM3P0C091 AC073150.1-201ENST00000450406 1084 ntBASIC13.16□□□□□ -0.3
FREM3P0C091 TUBB8P8-201ENST00000458717 1058 ntBASIC13.16□□□□□ -0.3
FREM3P0C091 RN7SL11P-201ENST00000471305 293 ntBASIC13.16□□□□□ -0.3
FREM3P0C091 AC134698.3-201ENST00000523880 214 ntBASIC13.16□□□□□ -0.3
FREM3P0C091 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.16□□□□□ -0.3
FREM3P0C091 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
FREM3P0C091 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
FREM3P0C091 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.16□□□□□ -0.3
FREM3P0C091 HCG18-245ENST00000602550 559 ntTSL 4 BASIC13.16□□□□□ -0.3
FREM3P0C091 AP000346.4-201ENST00000614827 381 ntBASIC13.16□□□□□ -0.3
FREM3P0C091 AC091812.3-201ENST00000621362 345 ntBASIC13.16□□□□□ -0.3
FREM3P0C091 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC13.16□□□□□ -0.3
FREM3P0C091 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC13.16□□□□□ -0.3
FREM3P0C091 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.16□□□□□ -0.3
FREM3P0C091 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 JTB-202ENST00000356648 1040 ntTSL 2 BASIC13.16□□□□□ -0.3
FREM3P0C091 RNA5SP359-201ENST00000364838 113 ntBASIC13.16□□□□□ -0.3
FREM3P0C091 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 NPPA-201ENST00000376476 728 ntTSL 3 BASIC13.16□□□□□ -0.3
FREM3P0C091 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
FREM3P0C091 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.16□□□□□ -0.3
FREM3P0C091 AC092580.1-201ENST00000433998 658 ntBASIC13.16□□□□□ -0.3
FREM3P0C091 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC13.16□□□□□ -0.3
FREM3P0C091 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
FREM3P0C091 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 RAN-210ENST00000541630 1475 ntTSL 2 BASIC13.16□□□□□ -0.3
FREM3P0C091 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13.16□□□□□ -0.3
FREM3P0C091 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.16□□□□□ -0.3
FREM3P0C091 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 MEG3_2.1-201ENST00000611456 105 ntBASIC13.16□□□□□ -0.3
FREM3P0C091 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC13.16□□□□□ -0.3
FREM3P0C091 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.16□□□□□ -0.3
FREM3P0C091 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC13.16□□□□□ -0.3
FREM3P0C091 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FREM3P0C091 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms