Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
NPHP1O15259 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
NPHP1O15259 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC18.35■□□□□ 0.53
NPHP1O15259 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC18.35■□□□□ 0.53
NPHP1O15259 MIR3180-2-201ENST00000581748 88 ntBASIC18.35■□□□□ 0.53
NPHP1O15259 RPL17P45-201ENST00000586289 509 ntBASIC18.35■□□□□ 0.53
NPHP1O15259 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 AC126177.1-201ENST00000547829 2218 ntBASIC18.35■□□□□ 0.53
NPHP1O15259 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
NPHP1O15259 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC18.35■□□□□ 0.53
NPHP1O15259 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
NPHP1O15259 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.35■□□□□ 0.53
NPHP1O15259 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.35■□□□□ 0.53
NPHP1O15259 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
NPHP1O15259 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC18.35■□□□□ 0.53
NPHP1O15259 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
NPHP1O15259 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
NPHP1O15259 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.34■□□□□ 0.53
NPHP1O15259 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.34■□□□□ 0.53
NPHP1O15259 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
NPHP1O15259 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC18.34■□□□□ 0.53
NPHP1O15259 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC18.34■□□□□ 0.53
NPHP1O15259 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC18.34■□□□□ 0.53
NPHP1O15259 WASH3P-207ENST00000560956 1394 ntBASIC18.34■□□□□ 0.53
NPHP1O15259 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC18.34■□□□□ 0.53
NPHP1O15259 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.34■□□□□ 0.53
NPHP1O15259 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC18.34■□□□□ 0.53
NPHP1O15259 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
NPHP1O15259 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 RPL18AP3-201ENST00000462885 528 ntBASIC18.34■□□□□ 0.53
NPHP1O15259 AC130709.1-201ENST00000484779 1212 ntBASIC18.34■□□□□ 0.53
NPHP1O15259 RN7SL530P-201ENST00000485097 298 ntBASIC18.34■□□□□ 0.53
NPHP1O15259 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC18.34■□□□□ 0.53
NPHP1O15259 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC18.34■□□□□ 0.53
NPHP1O15259 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
NPHP1O15259 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC18.34■□□□□ 0.53
NPHP1O15259 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
NPHP1O15259 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC18.34■□□□□ 0.53
NPHP1O15259 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
NPHP1O15259 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC18.34■□□□□ 0.53
NPHP1O15259 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NPHP1O15259 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC18.33■□□□□ 0.53
NPHP1O15259 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC18.33■□□□□ 0.53
NPHP1O15259 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
NPHP1O15259 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
NPHP1O15259 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NPHP1O15259 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC18.33■□□□□ 0.53
NPHP1O15259 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC18.33■□□□□ 0.53
NPHP1O15259 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
NPHP1O15259 KRT18P36-201ENST00000411618 1276 ntBASIC18.33■□□□□ 0.52
NPHP1O15259 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC18.33■□□□□ 0.52
NPHP1O15259 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC18.33■□□□□ 0.52
NPHP1O15259 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC18.33■□□□□ 0.52
NPHP1O15259 RN7SL81P-201ENST00000493781 261 ntBASIC18.33■□□□□ 0.52
NPHP1O15259 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC18.33■□□□□ 0.52
NPHP1O15259 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC18.33■□□□□ 0.52
NPHP1O15259 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NPHP1O15259 MIR6858-201ENST00000620733 67 ntBASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms