Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC14.92□□□□□ -0.02
HMGA1P17096 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.92□□□□□ -0.02
HMGA1P17096 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
HMGA1P17096 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC14.92□□□□□ -0.02
HMGA1P17096 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.92□□□□□ -0.02
HMGA1P17096 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
HMGA1P17096 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.92□□□□□ -0.02
HMGA1P17096 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.92□□□□□ -0.02
HMGA1P17096 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
HMGA1P17096 AL022313.4-201ENST00000562756 2046 ntBASIC14.92□□□□□ -0.02
HMGA1P17096 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGA1P17096 AC006372.4-201ENST00000624122 1543 ntBASIC14.92□□□□□ -0.02
HMGA1P17096 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC14.92□□□□□ -0.02
HMGA1P17096 AC015802.1-201ENST00000588104 1449 ntBASIC14.92□□□□□ -0.02
HMGA1P17096 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 AC097359.2-201ENST00000604992 2389 ntBASIC14.91□□□□□ -0.02
HMGA1P17096 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.91□□□□□ -0.02
HMGA1P17096 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.91□□□□□ -0.02
HMGA1P17096 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC14.91□□□□□ -0.02
HMGA1P17096 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC14.91□□□□□ -0.02
HMGA1P17096 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 HIST2H2BA-201ENST00000412169 381 ntBASIC14.91□□□□□ -0.02
HMGA1P17096 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC14.91□□□□□ -0.02
HMGA1P17096 GUSBP10-201ENST00000417412 665 ntBASIC14.91□□□□□ -0.02
HMGA1P17096 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC14.91□□□□□ -0.02
HMGA1P17096 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC14.91□□□□□ -0.02
HMGA1P17096 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC14.91□□□□□ -0.02
HMGA1P17096 AC095040.1-201ENST00000513286 675 ntBASIC14.91□□□□□ -0.02
HMGA1P17096 AC005740.1-201ENST00000515639 522 ntBASIC14.91□□□□□ -0.02
HMGA1P17096 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 AP000911.2-201ENST00000534330 502 ntBASIC14.91□□□□□ -0.02
HMGA1P17096 NEU3-207ENST00000534628 746 ntTSL 2 BASIC14.91□□□□□ -0.02
HMGA1P17096 AL512310.5-201ENST00000551999 515 ntBASIC14.91□□□□□ -0.02
HMGA1P17096 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
HMGA1P17096 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC14.91□□□□□ -0.02
HMGA1P17096 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC14.91□□□□□ -0.02
HMGA1P17096 AC005041.3-201ENST00000606287 649 ntBASIC14.91□□□□□ -0.02
HMGA1P17096 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC14.91□□□□□ -0.02
HMGA1P17096 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.91□□□□□ -0.02
HMGA1P17096 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
HMGA1P17096 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HMGA1P17096 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC14.91□□□□□ -0.02
HMGA1P17096 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.91□□□□□ -0.02
HMGA1P17096 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HMGA1P17096 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HMGA1P17096 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 INTS4P1-203ENST00000641008 3683 ntBASIC14.9□□□□□ -0.02
HMGA1P17096 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
HMGA1P17096 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HMGA1P17096 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 Z69890.1-201ENST00000382990 339 ntBASIC14.9□□□□□ -0.02
HMGA1P17096 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC14.9□□□□□ -0.02
HMGA1P17096 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 AC006987.1-201ENST00000413610 527 ntBASIC14.9□□□□□ -0.02
HMGA1P17096 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGA1P17096 AC079112.1-201ENST00000454972 939 ntBASIC14.9□□□□□ -0.02
HMGA1P17096 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGA1P17096 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
HMGA1P17096 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14.9□□□□□ -0.02
HMGA1P17096 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms