Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC11.95□□□□□ -0.5
SSSCA1O60232 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SSSCA1O60232 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
SSSCA1O60232 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
SSSCA1O60232 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SSSCA1O60232 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SSSCA1O60232 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SSSCA1O60232 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC11.94□□□□□ -0.5
SSSCA1O60232 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
SSSCA1O60232 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
SSSCA1O60232 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 TECTA-201ENST00000264037 6468 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 KRT8P35-201ENST00000483942 1338 ntBASIC11.94□□□□□ -0.5
SSSCA1O60232 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 MRPL37P1-201ENST00000592451 1337 ntBASIC11.94□□□□□ -0.5
SSSCA1O60232 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 AL805961.2-201ENST00000642139 4817 ntBASIC11.94□□□□□ -0.5
SSSCA1O60232 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 BEND3P3-201ENST00000611030 2440 ntBASIC11.94□□□□□ -0.5
SSSCA1O60232 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC11.94□□□□□ -0.5
SSSCA1O60232 PMP22-202ENST00000395936 816 ntTSL 3 BASIC11.94□□□□□ -0.5
SSSCA1O60232 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
SSSCA1O60232 HLA-V-204ENST00000476601 1289 ntBASIC11.94□□□□□ -0.5
SSSCA1O60232 GLI4-203ENST00000517468 963 ntTSL 5 BASIC11.94□□□□□ -0.5
SSSCA1O60232 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC11.94□□□□□ -0.5
SSSCA1O60232 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC11.94□□□□□ -0.5
SSSCA1O60232 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC11.94□□□□□ -0.5
SSSCA1O60232 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC11.94□□□□□ -0.5
SSSCA1O60232 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC11.94□□□□□ -0.5
SSSCA1O60232 SPDYE12P-201ENST00000618416 771 ntBASIC11.94□□□□□ -0.5
SSSCA1O60232 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC11.94□□□□□ -0.5
SSSCA1O60232 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
SSSCA1O60232 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 NCLP1-201ENST00000445357 1963 ntBASIC11.94□□□□□ -0.5
SSSCA1O60232 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 AL139385.1-201ENST00000611744 3272 ntBASIC11.94□□□□□ -0.5
SSSCA1O60232 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC11.94□□□□□ -0.5
SSSCA1O60232 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
SSSCA1O60232 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SSSCA1O60232 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC11.94□□□□□ -0.5
SSSCA1O60232 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC11.94□□□□□ -0.5
SSSCA1O60232 WNT5A-201ENST00000264634 6176 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SSSCA1O60232 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
SSSCA1O60232 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
SSSCA1O60232 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
SSSCA1O60232 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC11.93□□□□□ -0.5
SSSCA1O60232 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC11.93□□□□□ -0.5
SSSCA1O60232 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SSSCA1O60232 STK25-235ENST00000543554 2556 ntTSL 2 BASIC11.93□□□□□ -0.5
SSSCA1O60232 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SSSCA1O60232 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
SSSCA1O60232 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SSSCA1O60232 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC11.93□□□□□ -0.5
SSSCA1O60232 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SSSCA1O60232 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
SSSCA1O60232 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SSSCA1O60232 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
SSSCA1O60232 USO1-201ENST00000264904 4135 ntTSL 2 BASIC11.93□□□□□ -0.5
SSSCA1O60232 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC11.93□□□□□ -0.5
SSSCA1O60232 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms