RNA–Protein interactions for RNA: ENST00000361373.8

LDB3-202, Transcript of LIM domain binding 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDB3, Length 5,297 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-202ENST00000361373 DCAF8L2P0C7V8 631 aa23.73■■□□□ 1.39
LDB3-202ENST00000361373 NISCHQ9Y2I1 1504 aa23.48■■□□□ 1.35
LDB3-202ENST00000361373 SUPT5HO00267 1087 aaKnown RBP22.33■■□□□ 1.17
LDB3-202ENST00000361373 SHROOM4Q9ULL8 1493 aa22.02■■□□□ 1.12
LDB3-202ENST00000361373 APLP2Q06481 763 aa21.34■■□□□ 1.01
LDB3-202ENST00000361373 FAM9AQ8IZU1 332 aaPredicted RBP21.3■■□□□ 1
LDB3-202ENST00000361373 EHMT2Q96KQ7 1210 aa21.22■□□□□ 0.99
LDB3-202ENST00000361373 TRIM41Q8WV44 630 aa20.89■□□□□ 0.94
LDB3-202ENST00000361373 PELP1Q8IZL8 1130 aaKnown RBP20.68■□□□□ 0.9
LDB3-202ENST00000361373 UBTFP17480 764 aaKnown RBP20.59■□□□□ 0.89
LDB3-202ENST00000361373 RANGAP1P46060 587 aaPredicted RBP20.53■□□□□ 0.88
LDB3-202ENST00000361373 TTBK1Q5TCY1 1321 aaPredicted RBP20.49■□□□□ 0.87
LDB3-202ENST00000361373 ATP1B4Q9UN42 357 aaPredicted RBP20.49■□□□□ 0.87
LDB3-202ENST00000361373 PCGF6Q9BYE7 350 aa20.47■□□□□ 0.87
LDB3-202ENST00000361373 ZEB1P37275 1124 aaPredicted RBP20.46■□□□□ 0.87
LDB3-202ENST00000361373 CCER1Q8TC90 406 aaPredicted RBP20.28■□□□□ 0.84
LDB3-202ENST00000361373 ABCC9O60706 1549 aa20.18■□□□□ 0.82
LDB3-202ENST00000361373 CENPBP07199 599 aaPredicted RBP20.05■□□□□ 0.8
LDB3-202ENST00000361373 CHIC1Q5VXU3 224 aa19.96■□□□□ 0.79
LDB3-202ENST00000361373 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.94■□□□□ 0.78
LDB3-202ENST00000361373 HNRNPUL2Q1KMD3 747 aaKnown RBP19.94■□□□□ 0.78
LDB3-202ENST00000361373 TRIM26Q12899 539 aaPredicted RBP19.93■□□□□ 0.78
LDB3-202ENST00000361373 PABPN1Q86U42 306 aaKnown RBP eCLIP19.93■□□□□ 0.78
LDB3-202ENST00000361373 MYT1LQ9UL68 1186 aa19.81■□□□□ 0.76
LDB3-202ENST00000361373 PPARGC1BQ86YN6 1023 aaKnown RBP19.77■□□□□ 0.76
LDB3-202ENST00000361373 LOC105371045A0A1W2PR82 267 aa19.7■□□□□ 0.74
LDB3-202ENST00000361373 NEFLP07196 543 aa19.69■□□□□ 0.74
LDB3-202ENST00000361373 ITGAEP38570 1179 aa19.69■□□□□ 0.74
LDB3-202ENST00000361373 ERICH6Q7L0X2 663 aa19.55■□□□□ 0.72
LDB3-202ENST00000361373 ZCCHC6Q5VYS8 1495 aaKnown RBP19.43■□□□□ 0.7
LDB3-202ENST00000361373 CCDC180Q9P1Z9 1646 aa19.42■□□□□ 0.7
LDB3-202ENST00000361373 HRCP23327 699 aa19.4■□□□□ 0.7
LDB3-202ENST00000361373 YTHDC1Q96MU7 727 aaKnown RBP19.4■□□□□ 0.7
LDB3-202ENST00000361373 FAM50AQ14320 339 aaKnown RBP19.38■□□□□ 0.69
LDB3-202ENST00000361373 POLR3GLQ9BT43 218 aa19.38■□□□□ 0.69
LDB3-202ENST00000361373 SCRIBQ14160 1630 aa19.36■□□□□ 0.69
LDB3-202ENST00000361373 FBLN2P98095 1184 aa19.32■□□□□ 0.68
LDB3-202ENST00000361373 CSRNP3Q8WYN3 585 aa19.29■□□□□ 0.68
LDB3-202ENST00000361373 TRIM52Q96A61 297 aa19.26■□□□□ 0.67
LDB3-202ENST00000361373 CDK11AQ9UQ88 783 aaPredicted RBP19.16■□□□□ 0.66
LDB3-202ENST00000361373 SLC4A1APQ9BWU0 796 aaKnown RBP19.12■□□□□ 0.65
LDB3-202ENST00000361373 RB1CC1Q8TDY2 1594 aa19.12■□□□□ 0.65
LDB3-202ENST00000361373 DAXXQ9UER7 740 aaPredicted RBP19.02■□□□□ 0.63
LDB3-202ENST00000361373 NEUROD1Q13562 356 aa19.01■□□□□ 0.63
LDB3-202ENST00000361373 P3H3Q8IVL6 736 aa19■□□□□ 0.63
LDB3-202ENST00000361373 CNGB1Q14028 1251 aaPredicted RBP18.99■□□□□ 0.63
LDB3-202ENST00000361373 DIEXFQ68CQ4 756 aaKnown RBP18.98■□□□□ 0.63
LDB3-202ENST00000361373 NACADO15069 1562 aa18.97■□□□□ 0.63
LDB3-202ENST00000361373 NPM1P06748 294 aaKnown RBP eCLIP18.9■□□□□ 0.62
LDB3-202ENST00000361373 ZNF326Q5BKZ1 582 aaKnown RBP18.88■□□□□ 0.61
LDB3-202ENST00000361373 ZNF777Q9ULD5 760 aaPredicted RBP18.85■□□□□ 0.61
LDB3-202ENST00000361373 ARID3CA6NKF2 412 aa18.85■□□□□ 0.61
LDB3-202ENST00000361373 ANP32CO43423 234 aa18.85■□□□□ 0.61
LDB3-202ENST00000361373 ESF1Q9H501 851 aaKnown RBP18.79■□□□□ 0.6
LDB3-202ENST00000361373 MYT1Q01538 1121 aa18.77■□□□□ 0.6
LDB3-202ENST00000361373 EEA1Q15075 1411 aa18.73■□□□□ 0.59
LDB3-202ENST00000361373 CHMP7Q8WUX9 453 aaPredicted RBP18.73■□□□□ 0.59
LDB3-202ENST00000361373 ZNF316A6NFI3 1004 aaPredicted RBP18.72■□□□□ 0.59
LDB3-202ENST00000361373 BCANQ96GW7 911 aa18.72■□□□□ 0.59
LDB3-202ENST00000361373 CLSPNQ9HAW4 1339 aa18.71■□□□□ 0.59
LDB3-202ENST00000361373 RSF1Q96T23 1441 aaPredicted RBP18.71■□□□□ 0.59
LDB3-202ENST00000361373 DCAF1Q9Y4B6 1507 aa18.7■□□□□ 0.58
LDB3-202ENST00000361373 NEFMP07197 916 aa18.7■□□□□ 0.58
LDB3-202ENST00000361373 BAZ1BQ9UIG0 1483 aaKnown RBP18.67■□□□□ 0.58
LDB3-202ENST00000361373 TSPY4P0CV99 314 aa18.62■□□□□ 0.57
LDB3-202ENST00000361373 TSPY10P0CW01 314 aa18.62■□□□□ 0.57
LDB3-202ENST00000361373 TONSLQ96HA7 1378 aa18.61■□□□□ 0.57
LDB3-202ENST00000361373 MTUS2Q5JR59 1369 aa18.61■□□□□ 0.57
LDB3-202ENST00000361373 ZBTB47Q9UFB7 747 aaPredicted RBP18.59■□□□□ 0.57
LDB3-202ENST00000361373 STAG3Q9UJ98 1225 aa18.59■□□□□ 0.57
LDB3-202ENST00000361373 ACIN1Q9UKV3 1341 aaKnown RBP18.58■□□□□ 0.57
LDB3-202ENST00000361373 CLIP1P30622 1438 aa18.57■□□□□ 0.56
LDB3-202ENST00000361373 BAZ1AQ9NRL2 1556 aaPredicted RBP18.56■□□□□ 0.56
LDB3-202ENST00000361373 WRNQ14191 1432 aaPredicted RBP eCLIP18.56■□□□□ 0.56
LDB3-202ENST00000361373 KIF27Q86VH2 1401 aa18.51■□□□□ 0.55
LDB3-202ENST00000361373 CHGAP10645 457 aaKnown RBP18.51■□□□□ 0.55
LDB3-202ENST00000361373 GOLGA3Q08378 1498 aa18.51■□□□□ 0.55
LDB3-202ENST00000361373 PLEKHD1A6NEE1 506 aa18.47■□□□□ 0.55
LDB3-202ENST00000361373 CANXP27824 592 aaKnown RBP18.46■□□□□ 0.55
LDB3-202ENST00000361373 CHIC2Q9UKJ5 165 aa18.44■□□□□ 0.54
LDB3-202ENST00000361373 RTL5Q5HYW3 569 aaPredicted RBP18.42■□□□□ 0.54
LDB3-202ENST00000361373 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.4■□□□□ 0.54
LDB3-202ENST00000361373 SLC24A1O60721 1099 aa18.4■□□□□ 0.54
LDB3-202ENST00000361373 CEP164Q9UPV0 1460 aa18.38■□□□□ 0.53
LDB3-202ENST00000361373 ERCC6Q03468 1493 aa18.37■□□□□ 0.53
LDB3-202ENST00000361373 TNIKQ9UKE5 1360 aa18.34■□□□□ 0.53
LDB3-202ENST00000361373 CEP162Q5TB80 1403 aa18.34■□□□□ 0.53
LDB3-202ENST00000361373 KCNH8Q96L42 1107 aa18.29■□□□□ 0.52
LDB3-202ENST00000361373 CECR2Q9BXF3 1484 aa18.28■□□□□ 0.52
LDB3-202ENST00000361373 GTF3C3Q9Y5Q9 886 aa18.26■□□□□ 0.51
LDB3-202ENST00000361373 CFDP1Q9UEE9 299 aaPredicted RBP18.26■□□□□ 0.51
LDB3-202ENST00000361373 MYO15BQ96JP2 1530 aa18.24■□□□□ 0.51
LDB3-202ENST00000361373 SMARCA2P51531 1590 aa18.23■□□□□ 0.51
LDB3-202ENST00000361373 PLPPR3Q6T4P5 718 aa18.22■□□□□ 0.51
LDB3-202ENST00000361373 DDX10Q13206 875 aaKnown RBP18.21■□□□□ 0.51
LDB3-202ENST00000361373 RRP7BPQ9NSQ0 103 aa18.21■□□□□ 0.51
LDB3-202ENST00000361373 FHAD1B1AJZ9 1412 aa18.2■□□□□ 0.5
LDB3-202ENST00000361373 KDM2AQ9Y2K7 1162 aa18.2■□□□□ 0.5
LDB3-202ENST00000361373 TMC1Q8TDI8 760 aa18.19■□□□□ 0.5
LDB3-202ENST00000361373 EIF4G2P78344 907 aaKnown RBP eCLIP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms