Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 BX842568.4-201ENST00000421222 227 ntBASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 TSEN15P1-201ENST00000423257 515 ntBASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AC134915.1-201ENST00000426461 574 ntBASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AC241585.1-201ENST00000433527 519 ntBASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AC067863.1-201ENST00000494933 530 ntBASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 SNHG9-202ENST00000564014 471 ntBASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 LRRC59-203ENST00000576448 1531 ntBASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AC064801.2-201ENST00000625052 1303 ntBASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AL590440.2-201ENST00000641973 1595 ntBASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 RRP7BP-205ENST00000566851 833 ntBASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AC004840.1-201ENST00000636359 365 ntBASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms