Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL5A3P25940 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 AC008536.3-201ENST00000623282 1599 ntBASIC17.67■□□□□ 0.42
COL5A3P25940 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
COL5A3P25940 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC17.67■□□□□ 0.42
COL5A3P25940 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL5A3P25940 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL5A3P25940 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL5A3P25940 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 CTSL-202ENST00000342020 933 ntTSL 2 BASIC17.67■□□□□ 0.42
COL5A3P25940 AC093700.1-201ENST00000503348 717 ntBASIC17.67■□□□□ 0.42
COL5A3P25940 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 BMF-206ENST00000558774 671 ntTSL 3 BASIC17.67■□□□□ 0.42
COL5A3P25940 EMC4-208ENST00000559078 599 ntTSL 3 BASIC17.67■□□□□ 0.42
COL5A3P25940 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC17.67■□□□□ 0.42
COL5A3P25940 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC17.67■□□□□ 0.42
COL5A3P25940 AC245369.7-201ENST00000631386 350 ntBASIC17.67■□□□□ 0.42
COL5A3P25940 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC17.66■□□□□ 0.42
COL5A3P25940 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL5A3P25940 AP001267.2-201ENST00000532619 2086 ntBASIC17.66■□□□□ 0.42
COL5A3P25940 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
COL5A3P25940 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL5A3P25940 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL5A3P25940 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
COL5A3P25940 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC17.66■□□□□ 0.42
COL5A3P25940 MPV17-209ENST00000405983 859 ntTSL 5 BASIC17.66■□□□□ 0.42
COL5A3P25940 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC17.66■□□□□ 0.42
COL5A3P25940 VENTXP4-201ENST00000449029 958 ntBASIC17.66■□□□□ 0.42
COL5A3P25940 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC17.66■□□□□ 0.42
COL5A3P25940 TREX1-203ENST00000456089 629 ntTSL 3 BASIC17.66■□□□□ 0.42
COL5A3P25940 RNA5SP420-201ENST00000516997 137 ntBASIC17.66■□□□□ 0.42
COL5A3P25940 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC17.66■□□□□ 0.42
COL5A3P25940 DUT-207ENST00000559416 635 ntTSL 2 BASIC17.66■□□□□ 0.42
COL5A3P25940 AC132812.1-201ENST00000583145 892 ntBASIC17.66■□□□□ 0.42
COL5A3P25940 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC17.66■□□□□ 0.42
COL5A3P25940 AC080013.5-201ENST00000607044 679 ntBASIC17.66■□□□□ 0.42
COL5A3P25940 AC123912.6-201ENST00000612657 315 ntBASIC17.66■□□□□ 0.42
COL5A3P25940 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
COL5A3P25940 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC17.66■□□□□ 0.42
COL5A3P25940 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
COL5A3P25940 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.66■□□□□ 0.42
COL5A3P25940 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL5A3P25940 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A3P25940 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.65■□□□□ 0.42
COL5A3P25940 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC17.65■□□□□ 0.42
COL5A3P25940 AC126177.1-201ENST00000547829 2218 ntBASIC17.65■□□□□ 0.42
COL5A3P25940 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
COL5A3P25940 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.65■□□□□ 0.42
COL5A3P25940 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
COL5A3P25940 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
COL5A3P25940 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
COL5A3P25940 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A3P25940 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC17.65■□□□□ 0.42
COL5A3P25940 AC023141.7-201ENST00000430646 407 ntBASIC17.65■□□□□ 0.42
COL5A3P25940 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC17.65■□□□□ 0.42
COL5A3P25940 RN7SL684P-201ENST00000465665 294 ntBASIC17.65■□□□□ 0.42
COL5A3P25940 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
COL5A3P25940 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms