Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIMK1P53667 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIMK1P53667 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIMK1P53667 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC14.38□□□□□ -0.11
LIMK1P53667 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC14.37□□□□□ -0.11
LIMK1P53667 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.37□□□□□ -0.11
LIMK1P53667 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LIMK1P53667 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.37□□□□□ -0.11
LIMK1P53667 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
LIMK1P53667 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.37□□□□□ -0.11
LIMK1P53667 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
LIMK1P53667 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.37□□□□□ -0.11
LIMK1P53667 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC14.37□□□□□ -0.11
LIMK1P53667 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.37□□□□□ -0.11
LIMK1P53667 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.37□□□□□ -0.11
LIMK1P53667 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.37□□□□□ -0.11
LIMK1P53667 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 AP003680.1-201ENST00000598970 3660 ntBASIC14.37□□□□□ -0.11
LIMK1P53667 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 AL357373.1-201ENST00000394974 322 ntBASIC14.37□□□□□ -0.11
LIMK1P53667 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC14.37□□□□□ -0.11
LIMK1P53667 AL135901.1-201ENST00000451812 333 ntBASIC14.37□□□□□ -0.11
LIMK1P53667 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC14.37□□□□□ -0.11
LIMK1P53667 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC14.37□□□□□ -0.11
LIMK1P53667 AP000322.3-201ENST00000608665 388 ntBASIC14.37□□□□□ -0.11
LIMK1P53667 AC027601.3-201ENST00000622907 509 ntBASIC14.37□□□□□ -0.11
LIMK1P53667 AL137784.3-201ENST00000623858 2288 ntBASIC14.37□□□□□ -0.11
LIMK1P53667 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 AC020910.5-201ENST00000623668 1865 ntBASIC14.37□□□□□ -0.11
LIMK1P53667 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.37□□□□□ -0.11
LIMK1P53667 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LIMK1P53667 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
LIMK1P53667 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
LIMK1P53667 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.37□□□□□ -0.11
LIMK1P53667 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.37□□□□□ -0.11
LIMK1P53667 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.37□□□□□ -0.11
LIMK1P53667 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LIMK1P53667 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.36□□□□□ -0.11
LIMK1P53667 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
LIMK1P53667 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.36□□□□□ -0.11
LIMK1P53667 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.36□□□□□ -0.11
LIMK1P53667 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
LIMK1P53667 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LIMK1P53667 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
LIMK1P53667 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC14.36□□□□□ -0.11
LIMK1P53667 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.36□□□□□ -0.11
LIMK1P53667 AL645933.1-201ENST00000440087 609 ntBASIC14.36□□□□□ -0.11
LIMK1P53667 DPY19L2P5-201ENST00000456300 331 ntBASIC14.36□□□□□ -0.11
LIMK1P53667 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LIMK1P53667 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
LIMK1P53667 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
LIMK1P53667 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC14.36□□□□□ -0.11
LIMK1P53667 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC14.36□□□□□ -0.11
LIMK1P53667 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC14.36□□□□□ -0.11
LIMK1P53667 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC14.36□□□□□ -0.11
LIMK1P53667 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC14.36□□□□□ -0.11
LIMK1P53667 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 MT3-203ENST00000565838 421 ntTSL 3 BASIC14.36□□□□□ -0.11
LIMK1P53667 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC14.36□□□□□ -0.11
LIMK1P53667 AC055811.3-201ENST00000584952 686 ntBASIC14.36□□□□□ -0.11
LIMK1P53667 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.36□□□□□ -0.11
LIMK1P53667 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.36□□□□□ -0.11
LIMK1P53667 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.36□□□□□ -0.11
LIMK1P53667 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIMK1P53667 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
LIMK1P53667 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 MARK2P16-201ENST00000605714 1723 ntBASIC14.35□□□□□ -0.11
LIMK1P53667 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms