Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 LILRP1-201ENST00000444199 1370 ntBASIC12.26□□□□□ -0.45
HOXA1P49639 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 ATG16L1-202ENST00000373525 2767 ntTSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.26□□□□□ -0.45
HOXA1P49639 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 PLA2G6-202ENST00000335539 3060 ntTSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC12.26□□□□□ -0.45
HOXA1P49639 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 AL033529.1-201ENST00000480336 3447 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
HOXA1P49639 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXA1P49639 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXA1P49639 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC12.25□□□□□ -0.45
HOXA1P49639 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC12.25□□□□□ -0.45
HOXA1P49639 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC12.25□□□□□ -0.45
HOXA1P49639 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 AC004241.1-201ENST00000547799 3299 ntTSL 5 BASIC12.25□□□□□ -0.45
HOXA1P49639 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXA1P49639 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 SATB1-217ENST00000493952 626 ntTSL 3 BASIC12.25□□□□□ -0.45
HOXA1P49639 LINC01115-203ENST00000606068 577 ntBASIC12.25□□□□□ -0.45
HOXA1P49639 AC074044.1-201ENST00000609673 707 ntBASIC12.25□□□□□ -0.45
HOXA1P49639 HOTTIP_1.1-201ENST00000620415 57 ntBASIC12.25□□□□□ -0.45
HOXA1P49639 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC12.25□□□□□ -0.45
HOXA1P49639 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC12.25□□□□□ -0.45
HOXA1P49639 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
HOXA1P49639 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXA1P49639 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXA1P49639 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC12.25□□□□□ -0.45
HOXA1P49639 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC12.25□□□□□ -0.45
HOXA1P49639 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXA1P49639 PIP5K1A-204ENST00000409426 3737 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
HOXA1P49639 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC12.25□□□□□ -0.45
HOXA1P49639 SMAD1-215ENST00000515385 2085 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
HOXA1P49639 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC12.25□□□□□ -0.45
HOXA1P49639 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HOXA1P49639 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
HOXA1P49639 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXA1P49639 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC12.24□□□□□ -0.45
HOXA1P49639 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
HOXA1P49639 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 ZFYVE27-201ENST00000337540 2927 ntTSL 2 BASIC12.24□□□□□ -0.45
HOXA1P49639 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC12.24□□□□□ -0.45
HOXA1P49639 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
HOXA1P49639 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC12.24□□□□□ -0.45
HOXA1P49639 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 PES1-204ENST00000402284 2144 ntTSL 5 BASIC12.24□□□□□ -0.45
HOXA1P49639 DQX1-202ENST00000404568 2689 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
HOXA1P49639 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
HOXA1P49639 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC12.24□□□□□ -0.45
HOXA1P49639 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 RPL13P2-201ENST00000440687 659 ntBASIC12.24□□□□□ -0.45
HOXA1P49639 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms