RNA–Protein interactions for RNA: ENST00000355947.6

TRIM4-203, Transcript of tripartite motif containing 4, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene TRIM4, Length 3,383 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-203ENST00000355947 NISCHQ9Y2I1 1504 aa25.43■■□□□ 1.66
TRIM4-203ENST00000355947 SHROOM4Q9ULL8 1493 aa23.53■■□□□ 1.36
TRIM4-203ENST00000355947 SUPT5HO00267 1087 aaKnown RBP23.42■■□□□ 1.34
TRIM4-203ENST00000355947 PCGF6Q9BYE7 350 aa22.81■■□□□ 1.24
TRIM4-203ENST00000355947 DCAF8L2P0C7V8 631 aa22.8■■□□□ 1.24
TRIM4-203ENST00000355947 PPARGC1BQ86YN6 1023 aaKnown RBP22.69■■□□□ 1.22
TRIM4-203ENST00000355947 HRCP23327 699 aa22.62■■□□□ 1.21
TRIM4-203ENST00000355947 CHIC1Q5VXU3 224 aa22.33■■□□□ 1.17
TRIM4-203ENST00000355947 MYO15BQ96JP2 1530 aa22.23■■□□□ 1.15
TRIM4-203ENST00000355947 LOC105371045A0A1W2PR82 267 aa22.22■■□□□ 1.15
TRIM4-203ENST00000355947 EHMT2Q96KQ7 1210 aa22.18■■□□□ 1.14
TRIM4-203ENST00000355947 FAM9AQ8IZU1 332 aaPredicted RBP21.86■■□□□ 1.09
TRIM4-203ENST00000355947 TRIM26Q12899 539 aaPredicted RBP21.68■■□□□ 1.06
TRIM4-203ENST00000355947 TTBK1Q5TCY1 1321 aaPredicted RBP21.51■■□□□ 1.03
TRIM4-203ENST00000355947 ZCCHC6Q5VYS8 1495 aaKnown RBP21.45■■□□□ 1.02
TRIM4-203ENST00000355947 CCDC180Q9P1Z9 1646 aa21.43■■□□□ 1.02
TRIM4-203ENST00000355947 SCAF1Q9H7N4 1312 aaKnown RBP21.42■■□□□ 1.02
TRIM4-203ENST00000355947 TRIM41Q8WV44 630 aa21.39■■□□□ 1.02
TRIM4-203ENST00000355947 DCAF1Q9Y4B6 1507 aa21.34■■□□□ 1.01
TRIM4-203ENST00000355947 ZEB1P37275 1124 aaPredicted RBP21.29■■□□□ 1
TRIM4-203ENST00000355947 PELP1Q8IZL8 1130 aaKnown RBP21.27■□□□□ 0.99
TRIM4-203ENST00000355947 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.24■□□□□ 0.99
TRIM4-203ENST00000355947 CCER1Q8TC90 406 aaPredicted RBP21.19■□□□□ 0.98
TRIM4-203ENST00000355947 YTHDC1Q96MU7 727 aaKnown RBP21.06■□□□□ 0.96
TRIM4-203ENST00000355947 NEUROD1Q13562 356 aa21.02■□□□□ 0.96
TRIM4-203ENST00000355947 GTF3C3Q9Y5Q9 886 aa21■□□□□ 0.95
TRIM4-203ENST00000355947 ACIN1Q9UKV3 1341 aaKnown RBP20.91■□□□□ 0.94
TRIM4-203ENST00000355947 DIEXFQ68CQ4 756 aaKnown RBP20.88■□□□□ 0.93
TRIM4-203ENST00000355947 CENPBP07199 599 aaPredicted RBP20.86■□□□□ 0.93
TRIM4-203ENST00000355947 ABCC9O60706 1549 aa20.67■□□□□ 0.9
TRIM4-203ENST00000355947 RANGAP1P46060 587 aaPredicted RBP20.65■□□□□ 0.9
TRIM4-203ENST00000355947 RSF1Q96T23 1441 aaPredicted RBP20.58■□□□□ 0.88
TRIM4-203ENST00000355947 HNRNPUL2Q1KMD3 747 aaKnown RBP20.55■□□□□ 0.88
TRIM4-203ENST00000355947 SCRIBQ14160 1630 aa20.54■□□□□ 0.88
TRIM4-203ENST00000355947 UBTFP17480 764 aaKnown RBP20.54■□□□□ 0.88
TRIM4-203ENST00000355947 RB1CC1Q8TDY2 1594 aa20.48■□□□□ 0.87
TRIM4-203ENST00000355947 ZNF316A6NFI3 1004 aaPredicted RBP20.38■□□□□ 0.85
TRIM4-203ENST00000355947 MIER1Q8N108 512 aa20.37■□□□□ 0.85
TRIM4-203ENST00000355947 MYT1Q01538 1121 aa20.24■□□□□ 0.83
TRIM4-203ENST00000355947 CECR2Q9BXF3 1484 aa20.24■□□□□ 0.83
TRIM4-203ENST00000355947 APLP2Q06481 763 aa20.18■□□□□ 0.82
TRIM4-203ENST00000355947 BCANQ96GW7 911 aa20.08■□□□□ 0.8
TRIM4-203ENST00000355947 CEP162Q5TB80 1403 aa20.06■□□□□ 0.8
TRIM4-203ENST00000355947 ITGAEP38570 1179 aa20.04■□□□□ 0.8
TRIM4-203ENST00000355947 MROH2BQ7Z745 1585 aa20.04■□□□□ 0.8
TRIM4-203ENST00000355947 NACADO15069 1562 aa20.02■□□□□ 0.8
TRIM4-203ENST00000355947 CSRNP3Q8WYN3 585 aa20.02■□□□□ 0.8
TRIM4-203ENST00000355947 ABCC8Q09428 1581 aa19.99■□□□□ 0.79
TRIM4-203ENST00000355947 SOGA1O94964 1423 aa19.99■□□□□ 0.79
TRIM4-203ENST00000355947 CCDC88BA6NC98 1476 aa19.96■□□□□ 0.79
TRIM4-203ENST00000355947 WIZO95785 1651 aa19.94■□□□□ 0.78
TRIM4-203ENST00000355947 PABPN1Q86U42 306 aaKnown RBP eCLIP19.91■□□□□ 0.78
TRIM4-203ENST00000355947 RUSC2Q8N2Y8 1516 aa19.86■□□□□ 0.77
TRIM4-203ENST00000355947 SUPT16HQ9Y5B9 1047 aaKnown RBP19.82■□□□□ 0.76
TRIM4-203ENST00000355947 TNIKQ9UKE5 1360 aa19.76■□□□□ 0.75
TRIM4-203ENST00000355947 KCNH8Q96L42 1107 aa19.74■□□□□ 0.75
TRIM4-203ENST00000355947 HIRIP3Q9BW71 556 aaPredicted RBP19.68■□□□□ 0.74
TRIM4-203ENST00000355947 WRNQ14191 1432 aaPredicted RBP eCLIP19.66■□□□□ 0.74
TRIM4-203ENST00000355947 FKBP8Q14318 412 aa19.66■□□□□ 0.74
TRIM4-203ENST00000355947 ATP1B4Q9UN42 357 aaPredicted RBP19.65■□□□□ 0.74
TRIM4-203ENST00000355947 TSHZ2Q9NRE2 1034 aa19.64■□□□□ 0.74
TRIM4-203ENST00000355947 CLIP1P30622 1438 aa19.64■□□□□ 0.73
TRIM4-203ENST00000355947 DDX10Q13206 875 aaKnown RBP19.59■□□□□ 0.73
TRIM4-203ENST00000355947 GOLGA3Q08378 1498 aa19.58■□□□□ 0.73
TRIM4-203ENST00000355947 TRIM52Q96A61 297 aa19.57■□□□□ 0.72
TRIM4-203ENST00000355947 NEFLP07196 543 aa19.56■□□□□ 0.72
TRIM4-203ENST00000355947 ANP32EQ9BTT0 268 aa19.54■□□□□ 0.72
TRIM4-203ENST00000355947 KANK4Q5T7N3 995 aaPredicted RBP19.51■□□□□ 0.71
TRIM4-203ENST00000355947 BAZ1AQ9NRL2 1556 aaPredicted RBP19.5■□□□□ 0.71
TRIM4-203ENST00000355947 IRX6P78412 446 aaPredicted RBP19.45■□□□□ 0.7
TRIM4-203ENST00000355947 BCL11AQ9H165 835 aa19.45■□□□□ 0.7
TRIM4-203ENST00000355947 FAM50AQ14320 339 aaKnown RBP19.43■□□□□ 0.7
TRIM4-203ENST00000355947 UNC13AQ9UPW8 1703 aa19.43■□□□□ 0.7
TRIM4-203ENST00000355947 CNGB1Q14028 1251 aaPredicted RBP19.4■□□□□ 0.7
TRIM4-203ENST00000355947 SIN3AQ96ST3 1273 aa19.4■□□□□ 0.7
TRIM4-203ENST00000355947 ERICH6Q7L0X2 663 aa19.39■□□□□ 0.69
TRIM4-203ENST00000355947 DHX57Q6P158 1386 aaKnown RBP19.39■□□□□ 0.69
TRIM4-203ENST00000355947 VPS8Q8N3P4 1428 aa19.38■□□□□ 0.69
TRIM4-203ENST00000355947 EEA1Q15075 1411 aa19.38■□□□□ 0.69
TRIM4-203ENST00000355947 SMARCA4P51532 1647 aa19.37■□□□□ 0.69
TRIM4-203ENST00000355947 CEP164Q9UPV0 1460 aa19.35■□□□□ 0.69
TRIM4-203ENST00000355947 RAPGEF2Q9Y4G8 1499 aa19.35■□□□□ 0.69
TRIM4-203ENST00000355947 P3H3Q8IVL6 736 aa19.35■□□□□ 0.69
TRIM4-203ENST00000355947 TOP2AP11388 1531 aaKnown RBP19.32■□□□□ 0.68
TRIM4-203ENST00000355947 BICRAQ9NZM4 1560 aa19.32■□□□□ 0.68
TRIM4-203ENST00000355947 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
TRIM4-203ENST00000355947 RBM19Q9Y4C8 960 aaKnown RBP19.29■□□□□ 0.68
TRIM4-203ENST00000355947 CLSPNQ9HAW4 1339 aa19.28■□□□□ 0.68
TRIM4-203ENST00000355947 EIF4G1Q04637 1599 aaKnown RBP19.25■□□□□ 0.67
TRIM4-203ENST00000355947 ANP32CO43423 234 aa19.24■□□□□ 0.67
TRIM4-203ENST00000355947 SENP3-EIF4A1A0A087X0R7 540 aa19.18■□□□□ 0.66
TRIM4-203ENST00000355947 HNRNPUQ00839 825 aaKnown RBP eCLIP19.18■□□□□ 0.66
TRIM4-203ENST00000355947 SYNJ1O43426 1573 aa19.13■□□□□ 0.65
TRIM4-203ENST00000355947 KIF21BO75037 1637 aa19.12■□□□□ 0.65
TRIM4-203ENST00000355947 RAB3GAP2Q9H2M9 1393 aa19.12■□□□□ 0.65
TRIM4-203ENST00000355947 CCNB3Q8WWL7 1395 aa19.12■□□□□ 0.65
TRIM4-203ENST00000355947 CDK11AQ9UQ88 783 aaPredicted RBP19.08■□□□□ 0.64
TRIM4-203ENST00000355947 POLR3GLQ9BT43 218 aa19.06■□□□□ 0.64
TRIM4-203ENST00000355947 ATAD2BQ9ULI0 1458 aa19.04■□□□□ 0.64
TRIM4-203ENST00000355947 NBR1Q14596 966 aa19.02■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms