RNA–Protein interactions for RNA: ENST00000515385.1

SMAD1-215, Transcript of SMAD family member 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SMAD1, Length 2,085 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-215ENST00000515385 NISCHQ9Y2I1 1504 aa23.83■■□□□ 1.4
SMAD1-215ENST00000515385 PELP1Q8IZL8 1130 aaKnown RBP21.73■■□□□ 1.07
SMAD1-215ENST00000515385 HRCP23327 699 aa21.7■■□□□ 1.06
SMAD1-215ENST00000515385 MYT1Q01538 1121 aa21.32■■□□□ 1
SMAD1-215ENST00000515385 PCGF6Q9BYE7 350 aa20.97■□□□□ 0.95
SMAD1-215ENST00000515385 PPARGC1BQ86YN6 1023 aaKnown RBP20.9■□□□□ 0.94
SMAD1-215ENST00000515385 SUPT5HO00267 1087 aaKnown RBP20.85■□□□□ 0.93
SMAD1-215ENST00000515385 MYO15BQ96JP2 1530 aa20.83■□□□□ 0.93
SMAD1-215ENST00000515385 SHROOM4Q9ULL8 1493 aa20.79■□□□□ 0.92
SMAD1-215ENST00000515385 DCAF1Q9Y4B6 1507 aa20.79■□□□□ 0.92
SMAD1-215ENST00000515385 CHIC1Q5VXU3 224 aa20.77■□□□□ 0.92
SMAD1-215ENST00000515385 ZEB1P37275 1124 aaPredicted RBP20.58■□□□□ 0.88
SMAD1-215ENST00000515385 CCDC180Q9P1Z9 1646 aa20.53■□□□□ 0.88
SMAD1-215ENST00000515385 TRIM26Q12899 539 aaPredicted RBP20.5■□□□□ 0.87
SMAD1-215ENST00000515385 SCAF1Q9H7N4 1312 aaKnown RBP20.46■□□□□ 0.87
SMAD1-215ENST00000515385 TTBK1Q5TCY1 1321 aaPredicted RBP20.39■□□□□ 0.86
SMAD1-215ENST00000515385 ZCCHC6Q5VYS8 1495 aaKnown RBP20.33■□□□□ 0.85
SMAD1-215ENST00000515385 LOC105371045A0A1W2PR82 267 aa20.1■□□□□ 0.81
SMAD1-215ENST00000515385 ACIN1Q9UKV3 1341 aaKnown RBP20.06■□□□□ 0.8
SMAD1-215ENST00000515385 CENPBP07199 599 aaPredicted RBP19.88■□□□□ 0.77
SMAD1-215ENST00000515385 NEUROD1Q13562 356 aa19.85■□□□□ 0.77
SMAD1-215ENST00000515385 GTF3C3Q9Y5Q9 886 aa19.78■□□□□ 0.76
SMAD1-215ENST00000515385 DIEXFQ68CQ4 756 aaKnown RBP19.58■□□□□ 0.73
SMAD1-215ENST00000515385 CCER1Q8TC90 406 aaPredicted RBP19.45■□□□□ 0.7
SMAD1-215ENST00000515385 TRIM41Q8WV44 630 aa19.44■□□□□ 0.7
SMAD1-215ENST00000515385 DCAF8L2P0C7V8 631 aa19.39■□□□□ 0.69
SMAD1-215ENST00000515385 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.35■□□□□ 0.69
SMAD1-215ENST00000515385 ABCC9O60706 1549 aa19.35■□□□□ 0.69
SMAD1-215ENST00000515385 BCL11AQ9H165 835 aa19.29■□□□□ 0.68
SMAD1-215ENST00000515385 ZNF316A6NFI3 1004 aaPredicted RBP19.25■□□□□ 0.67
SMAD1-215ENST00000515385 PRKCSHP14314 528 aaPredicted RBP19.24■□□□□ 0.67
SMAD1-215ENST00000515385 CLSPNQ9HAW4 1339 aa19.22■□□□□ 0.67
SMAD1-215ENST00000515385 FAM9AQ8IZU1 332 aaPredicted RBP19.2■□□□□ 0.66
SMAD1-215ENST00000515385 RSF1Q96T23 1441 aaPredicted RBP19.18■□□□□ 0.66
SMAD1-215ENST00000515385 ERICH6Q7L0X2 663 aa19.16■□□□□ 0.66
SMAD1-215ENST00000515385 RB1CC1Q8TDY2 1594 aa19.16■□□□□ 0.66
SMAD1-215ENST00000515385 WRNQ14191 1432 aaPredicted RBP eCLIP19.06■□□□□ 0.64
SMAD1-215ENST00000515385 YTHDC1Q96MU7 727 aaKnown RBP19.05■□□□□ 0.64
SMAD1-215ENST00000515385 ANP32EQ9BTT0 268 aa19.03■□□□□ 0.64
SMAD1-215ENST00000515385 MIER1Q8N108 512 aa18.99■□□□□ 0.63
SMAD1-215ENST00000515385 APLP2Q06481 763 aa18.96■□□□□ 0.63
SMAD1-215ENST00000515385 EHMT2Q96KQ7 1210 aa18.91■□□□□ 0.62
SMAD1-215ENST00000515385 SUPT16HQ9Y5B9 1047 aaKnown RBP18.86■□□□□ 0.61
SMAD1-215ENST00000515385 TSHZ2Q9NRE2 1034 aa18.81■□□□□ 0.6
SMAD1-215ENST00000515385 CEP162Q5TB80 1403 aa18.74■□□□□ 0.59
SMAD1-215ENST00000515385 TNIKQ9UKE5 1360 aa18.72■□□□□ 0.59
SMAD1-215ENST00000515385 SCRIBQ14160 1630 aa18.67■□□□□ 0.58
SMAD1-215ENST00000515385 CSRNP3Q8WYN3 585 aa18.66■□□□□ 0.58
SMAD1-215ENST00000515385 EIF4G1Q04637 1599 aaKnown RBP18.63■□□□□ 0.57
SMAD1-215ENST00000515385 EEA1Q15075 1411 aa18.6■□□□□ 0.57
SMAD1-215ENST00000515385 MROH2BQ7Z745 1585 aa18.51■□□□□ 0.55
SMAD1-215ENST00000515385 BAZ1AQ9NRL2 1556 aaPredicted RBP18.49■□□□□ 0.55
SMAD1-215ENST00000515385 CECR2Q9BXF3 1484 aa18.45■□□□□ 0.54
SMAD1-215ENST00000515385 HNRNPUL2Q1KMD3 747 aaKnown RBP18.45■□□□□ 0.54
SMAD1-215ENST00000515385 GOLGA3Q08378 1498 aa18.44■□□□□ 0.54
SMAD1-215ENST00000515385 WIZO95785 1651 aa18.43■□□□□ 0.54
SMAD1-215ENST00000515385 CCDC88BA6NC98 1476 aa18.43■□□□□ 0.54
SMAD1-215ENST00000515385 UBTFP17480 764 aaKnown RBP18.38■□□□□ 0.53
SMAD1-215ENST00000515385 RBM19Q9Y4C8 960 aaKnown RBP18.37■□□□□ 0.53
SMAD1-215ENST00000515385 ABCC8Q09428 1581 aa18.36■□□□□ 0.53
SMAD1-215ENST00000515385 SOGA1O94964 1423 aa18.35■□□□□ 0.53
SMAD1-215ENST00000515385 MYT1LQ9UL68 1186 aa18.35■□□□□ 0.53
SMAD1-215ENST00000515385 DHX57Q6P158 1386 aaKnown RBP18.3■□□□□ 0.52
SMAD1-215ENST00000515385 VPS8Q8N3P4 1428 aa18.29■□□□□ 0.52
SMAD1-215ENST00000515385 NEFLP07196 543 aa18.28■□□□□ 0.52
SMAD1-215ENST00000515385 FKBP8Q14318 412 aa18.27■□□□□ 0.52
SMAD1-215ENST00000515385 CEP164Q9UPV0 1460 aa18.25■□□□□ 0.51
SMAD1-215ENST00000515385 TOP2AP11388 1531 aaKnown RBP18.25■□□□□ 0.51
SMAD1-215ENST00000515385 NACADO15069 1562 aa18.24■□□□□ 0.51
SMAD1-215ENST00000515385 FANCIQ9NVI1 1328 aa18.23■□□□□ 0.51
SMAD1-215ENST00000515385 CLIP1P30622 1438 aa18.23■□□□□ 0.51
SMAD1-215ENST00000515385 KIF21BO75037 1637 aa18.22■□□□□ 0.51
SMAD1-215ENST00000515385 BCANQ96GW7 911 aa18.21■□□□□ 0.51
SMAD1-215ENST00000515385 RUSC2Q8N2Y8 1516 aa18.18■□□□□ 0.5
SMAD1-215ENST00000515385 BAZ1BQ9UIG0 1483 aaKnown RBP18.17■□□□□ 0.5
SMAD1-215ENST00000515385 MSH5O43196 834 aa18.14■□□□□ 0.49
SMAD1-215ENST00000515385 SMARCA2P51531 1590 aa18.14■□□□□ 0.49
SMAD1-215ENST00000515385 CUX2O14529 1486 aa18.11■□□□□ 0.49
SMAD1-215ENST00000515385 CCER2I3L3R5 266 aa18.07■□□□□ 0.48
SMAD1-215ENST00000515385 KCNH8Q96L42 1107 aa18.06■□□□□ 0.48
SMAD1-215ENST00000515385 CDK11AQ9UQ88 783 aaPredicted RBP18.03■□□□□ 0.48
SMAD1-215ENST00000515385 RRBP1Q9P2E9 1410 aaKnown RBP18.01■□□□□ 0.47
SMAD1-215ENST00000515385 SLC24A1O60721 1099 aa18.01■□□□□ 0.47
SMAD1-215ENST00000515385 ERICH6BQ5W0A0 696 aa17.97■□□□□ 0.47
SMAD1-215ENST00000515385 UBE2Q2Q8WVN8 375 aa17.96■□□□□ 0.47
SMAD1-215ENST00000515385 ITGAEP38570 1179 aa17.95■□□□□ 0.46
SMAD1-215ENST00000515385 DEKP35659 375 aaKnown RBP17.95■□□□□ 0.46
SMAD1-215ENST00000515385 SMARCA4P51532 1647 aa17.94■□□□□ 0.46
SMAD1-215ENST00000515385 PPP1R15AO75807 674 aaPredicted RBP17.93■□□□□ 0.46
SMAD1-215ENST00000515385 TIMELESSQ9UNS1 1208 aa17.91■□□□□ 0.46
SMAD1-215ENST00000515385 ANP32CO43423 234 aa17.9■□□□□ 0.46
SMAD1-215ENST00000515385 DDX10Q13206 875 aaKnown RBP17.9■□□□□ 0.46
SMAD1-215ENST00000515385 RAPGEF2Q9Y4G8 1499 aa17.88■□□□□ 0.45
SMAD1-215ENST00000515385 CCNB3Q8WWL7 1395 aa17.86■□□□□ 0.45
SMAD1-215ENST00000515385 ANO8Q9HCE9 1232 aaPredicted RBP17.86■□□□□ 0.45
SMAD1-215ENST00000515385 MAPKBP1O60336 1514 aa17.85■□□□□ 0.45
SMAD1-215ENST00000515385 TRIM52Q96A61 297 aa17.83■□□□□ 0.45
SMAD1-215ENST00000515385 SYNJ1O43426 1573 aa17.82■□□□□ 0.44
SMAD1-215ENST00000515385 ARAP1Q96P48 1450 aa17.8■□□□□ 0.44
SMAD1-215ENST00000515385 ERICH3Q5RHP9 1530 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms