Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 BRCA1-225ENST00000586385 781 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 Z69706.1-201ENST00000595428 547 ntBASIC14.62□□□□□ -0.07
COL6A3P12111 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 AL596087.1-201ENST00000400979 1969 ntBASIC14.62□□□□□ -0.07
COL6A3P12111 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.62□□□□□ -0.07
COL6A3P12111 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL6A3P12111 NDRG1-222ENST00000522476 1385 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL6A3P12111 WAC-202ENST00000347934 2839 ntTSL 5 BASIC14.62□□□□□ -0.07
COL6A3P12111 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 FOLR1-203ENST00000393679 1331 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
COL6A3P12111 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
COL6A3P12111 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 AL031577.1-201ENST00000339867 399 ntBASIC14.61□□□□□ -0.07
COL6A3P12111 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A3P12111 GEMIN8-203ENST00000398355 1119 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 RPL10-203ENST00000406022 748 ntTSL 3 BASIC14.61□□□□□ -0.07
COL6A3P12111 MEF2C-AS1-205ENST00000509179 388 ntTSL 5 BASIC14.61□□□□□ -0.07
COL6A3P12111 AP003062.1-201ENST00000528497 762 ntTSL 3 BASIC14.61□□□□□ -0.07
COL6A3P12111 MIR5091-201ENST00000578707 93 ntBASIC14.61□□□□□ -0.07
COL6A3P12111 DRG2-220ENST00000583355 891 ntTSL 3 BASIC14.61□□□□□ -0.07
COL6A3P12111 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
COL6A3P12111 Z98885.3-201ENST00000624882 1757 ntBASIC14.61□□□□□ -0.07
COL6A3P12111 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 COPS7A-201ENST00000229251 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 U3.5-201ENST00000363448 216 ntBASIC14.61□□□□□ -0.07
COL6A3P12111 RIPPLY2-201ENST00000369687 521 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
COL6A3P12111 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 AL583804.1-201ENST00000448643 810 ntTSL 3 BASIC14.61□□□□□ -0.07
COL6A3P12111 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC14.61□□□□□ -0.07
COL6A3P12111 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A3P12111 STX3-207ENST00000633708 3111 ntTSL 5 BASIC14.61□□□□□ -0.07
COL6A3P12111 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 AL139424.2-202ENST00000641335 1369 ntBASIC14.61□□□□□ -0.07
COL6A3P12111 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
COL6A3P12111 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A3P12111 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.61□□□□□ -0.07
COL6A3P12111 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A3P12111 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A3P12111 ANAPC15-201ENST00000227618 886 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 TPM3P7-201ENST00000338274 732 ntBASIC14.61□□□□□ -0.07
COL6A3P12111 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC14.61□□□□□ -0.07
COL6A3P12111 AL031058.1-201ENST00000561592 888 ntBASIC14.61□□□□□ -0.07
COL6A3P12111 MT1L-201ENST00000565768 411 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL6A3P12111 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 ZNF577-202ENST00000451628 1771 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
COL6A3P12111 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
COL6A3P12111 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC14.6□□□□□ -0.07
COL6A3P12111 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.6□□□□□ -0.07
COL6A3P12111 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
COL6A3P12111 ABCA1-201ENST00000374733 923 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A3P12111 HNRNPA3P12-201ENST00000437410 1063 ntBASIC14.6□□□□□ -0.07
COL6A3P12111 AC104115.1-201ENST00000484005 623 ntBASIC14.6□□□□□ -0.07
COL6A3P12111 RANBP6-202ENST00000485372 1000 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A3P12111 RN7SL2-201ENST00000490232 300 ntBASIC14.6□□□□□ -0.07
COL6A3P12111 RN7SL4P-201ENST00000584058 295 ntBASIC14.6□□□□□ -0.07
COL6A3P12111 IGHD-202ENST00000613640 1155 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
COL6A3P12111 C17orf98-201ENST00000614158 632 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL6A3P12111 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 FAM90A27P-201ENST00000593323 1370 ntBASIC14.6□□□□□ -0.07
COL6A3P12111 FAM90A28P-202ENST00000597191 1374 ntBASIC14.6□□□□□ -0.07
COL6A3P12111 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.6□□□□□ -0.07
COL6A3P12111 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 AMT-256ENST00000638063 1783 ntTSL 5 BASIC14.6□□□□□ -0.07
COL6A3P12111 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 AL162595.1-201ENST00000429227 868 ntTSL 5 BASIC14.6□□□□□ -0.07
COL6A3P12111 AL121972.2-201ENST00000431108 556 ntTSL 4 BASIC14.6□□□□□ -0.07
COL6A3P12111 AC008267.3-201ENST00000448776 712 ntBASIC14.6□□□□□ -0.07
COL6A3P12111 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC14.6□□□□□ -0.07
COL6A3P12111 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
COL6A3P12111 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL6A3P12111 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.59□□□□□ -0.07
COL6A3P12111 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
COL6A3P12111 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.59□□□□□ -0.07
COL6A3P12111 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms