RNA–Protein interactions for RNA: ENST00000533953.5

CMTM1-219, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CMTM1, Length 934 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-219ENST00000533953 NISCHQ9Y2I1 1504 aa32.36■■■□□ 2.77
CMTM1-219ENST00000533953 CCDC180Q9P1Z9 1646 aa28.58■■■□□ 2.17
CMTM1-219ENST00000533953 ABCC9O60706 1549 aa28.24■■■□□ 2.11
CMTM1-219ENST00000533953 DCAF8L2P0C7V8 631 aa27.31■■□□□ 1.96
CMTM1-219ENST00000533953 RB1CC1Q8TDY2 1594 aa26.98■■□□□ 1.91
CMTM1-219ENST00000533953 NACADO15069 1562 aa26.95■■□□□ 1.9
CMTM1-219ENST00000533953 ZCCHC6Q5VYS8 1495 aaKnown RBP26.93■■□□□ 1.9
CMTM1-219ENST00000533953 MYO15BQ96JP2 1530 aa26.73■■□□□ 1.87
CMTM1-219ENST00000533953 DCAF1Q9Y4B6 1507 aa26.65■■□□□ 1.86
CMTM1-219ENST00000533953 PABPN1Q86U42 306 aaKnown RBP eCLIP26.52■■□□□ 1.84
CMTM1-219ENST00000533953 UNC13AQ9UPW8 1703 aa26.34■■□□□ 1.81
CMTM1-219ENST00000533953 SCRIBQ14160 1630 aa26.28■■□□□ 1.8
CMTM1-219ENST00000533953 BICRAQ9NZM4 1560 aa26.24■■□□□ 1.79
CMTM1-219ENST00000533953 DNAJC5BQ9UF47 199 aa26.05■■□□□ 1.76
CMTM1-219ENST00000533953 SHROOM4Q9ULL8 1493 aa25.83■■□□□ 1.73
CMTM1-219ENST00000533953 EIF4G1Q04637 1599 aaKnown RBP25.52■■□□□ 1.68
CMTM1-219ENST00000533953 CC2D2AQ9P2K1 1620 aa25.43■■□□□ 1.66
CMTM1-219ENST00000533953 CECR2Q9BXF3 1484 aa25.34■■□□□ 1.65
CMTM1-219ENST00000533953 SMARCA4P51532 1647 aa25.06■■□□□ 1.6
CMTM1-219ENST00000533953 BAZ1AQ9NRL2 1556 aaPredicted RBP25.02■■□□□ 1.6
CMTM1-219ENST00000533953 MROH2BQ7Z745 1585 aa25.01■■□□□ 1.59
CMTM1-219ENST00000533953 ATAD2BQ9ULI0 1458 aa25■■□□□ 1.59
CMTM1-219ENST00000533953 NCAPD3P42695 1498 aa24.95■■□□□ 1.58
CMTM1-219ENST00000533953 SMARCA2P51531 1590 aa24.86■■□□□ 1.57
CMTM1-219ENST00000533953 BAZ1BQ9UIG0 1483 aaKnown RBP24.77■■□□□ 1.56
CMTM1-219ENST00000533953 PEG3Q9GZU2 1588 aa24.76■■□□□ 1.55
CMTM1-219ENST00000533953 RSF1Q96T23 1441 aaPredicted RBP24.75■■□□□ 1.55
CMTM1-219ENST00000533953 HMGXB3Q12766 1538 aa24.73■■□□□ 1.55
CMTM1-219ENST00000533953 WIZO95785 1651 aa24.71■■□□□ 1.55
CMTM1-219ENST00000533953 NESP48681 1621 aa24.46■■□□□ 1.51
CMTM1-219ENST00000533953 TOP2AP11388 1531 aaKnown RBP24.38■■□□□ 1.49
CMTM1-219ENST00000533953 SUPT5HO00267 1087 aaKnown RBP24.31■■□□□ 1.48
CMTM1-219ENST00000533953 ERCC6Q03468 1493 aa24.27■■□□□ 1.48
CMTM1-219ENST00000533953 CADPSQ9ULU8 1353 aa24.27■■□□□ 1.48
CMTM1-219ENST00000533953 CCDC88BA6NC98 1476 aa24.2■■□□□ 1.47
CMTM1-219ENST00000533953 LAMC3Q9Y6N6 1575 aa24.2■■□□□ 1.46
CMTM1-219ENST00000533953 PDS5BQ9NTI5 1447 aa24.11■■□□□ 1.45
CMTM1-219ENST00000533953 CFTRP13569 1480 aa24.08■■□□□ 1.45
CMTM1-219ENST00000533953 KIF21AQ7Z4S6 1674 aa24.01■■□□□ 1.43
CMTM1-219ENST00000533953 FANCD2Q9BXW9 1451 aa23.98■■□□□ 1.43
CMTM1-219ENST00000533953 THOC2Q8NI27 1593 aaKnown RBP23.91■■□□□ 1.42
CMTM1-219ENST00000533953 CUX2O14529 1486 aa23.9■■□□□ 1.42
CMTM1-219ENST00000533953 CEP164Q9UPV0 1460 aa23.9■■□□□ 1.42
CMTM1-219ENST00000533953 MRC2Q9UBG0 1479 aa23.87■■□□□ 1.41
CMTM1-219ENST00000533953 URB2Q14146 1524 aaKnown RBP23.75■■□□□ 1.39
CMTM1-219ENST00000533953 WDR62O43379 1518 aa23.74■■□□□ 1.39
CMTM1-219ENST00000533953 PRDM2Q13029 1718 aa23.68■■□□□ 1.38
CMTM1-219ENST00000533953 TOPBP1Q92547 1522 aa23.59■■□□□ 1.37
CMTM1-219ENST00000533953 DNMBPQ6XZF7 1577 aa23.49■■□□□ 1.35
CMTM1-219ENST00000533953 ABCC8Q09428 1581 aa23.48■■□□□ 1.35
CMTM1-219ENST00000533953 CUX1P39880 1505 aa23.43■■□□□ 1.34
CMTM1-219ENST00000533953 ZNF608Q9ULD9 1512 aaPredicted RBP23.4■■□□□ 1.34
CMTM1-219ENST00000533953 IFT140Q96RY7 1462 aa23.4■■□□□ 1.34
CMTM1-219ENST00000533953 POLA1P09884 1462 aaPredicted RBP23.39■■□□□ 1.34
CMTM1-219ENST00000533953 RAD54L2Q9Y4B4 1467 aa23.38■■□□□ 1.33
CMTM1-219ENST00000533953 FGD5Q6ZNL6 1462 aa23.35■■□□□ 1.33
CMTM1-219ENST00000533953 SOGA1O94964 1423 aa23.34■■□□□ 1.33
CMTM1-219ENST00000533953 DNAJC5Q9H3Z4 198 aa23.32■■□□□ 1.32
CMTM1-219ENST00000533953 WRNQ14191 1432 aaPredicted RBP eCLIP23.3■■□□□ 1.32
CMTM1-219ENST00000533953 AQRO60306 1485 aaKnown RBP eCLIP23.3■■□□□ 1.32
CMTM1-219ENST00000533953 TDRD9Q8NDG6 1382 aaKnown RBP23.28■■□□□ 1.32
CMTM1-219ENST00000533953 TARBP1Q13395 1621 aaKnown RBP23.28■■□□□ 1.32
CMTM1-219ENST00000533953 SYNJ1O43426 1573 aa23.23■■□□□ 1.31
CMTM1-219ENST00000533953 EIF4G3O43432 1585 aaKnown RBP23.17■■□□□ 1.3
CMTM1-219ENST00000533953 TOP2BQ02880 1626 aa23.15■■□□□ 1.3
CMTM1-219ENST00000533953 BIVM-ERCC5R4GMW8 1640 aa23.11■■□□□ 1.29
CMTM1-219ENST00000533953 FBLN2P98095 1184 aa23.08■■□□□ 1.29
CMTM1-219ENST00000533953 OSCARQ8IYS5 282 aa23.08■■□□□ 1.29
CMTM1-219ENST00000533953 ABCA10Q8WWZ4 1543 aa23.08■■□□□ 1.28
CMTM1-219ENST00000533953 GAPVD1Q14C86 1478 aa23.03■■□□□ 1.28
CMTM1-219ENST00000533953 WDR97A6NE52 1622 aa23.01■■□□□ 1.27
CMTM1-219ENST00000533953 SNAPC4Q5SXM2 1469 aa23.01■■□□□ 1.27
CMTM1-219ENST00000533953 GRIN2BQ13224 1484 aa23■■□□□ 1.27
CMTM1-219ENST00000533953 CHMP7Q8WUX9 453 aaPredicted RBP22.95■■□□□ 1.26
CMTM1-219ENST00000533953 ABCA5Q8WWZ7 1642 aa22.93■■□□□ 1.26
CMTM1-219ENST00000533953 MAGI1Q96QZ7 1491 aaPredicted RBP22.88■■□□□ 1.25
CMTM1-219ENST00000533953 TRIM41Q8WV44 630 aa22.87■■□□□ 1.25
CMTM1-219ENST00000533953 CHD1O14646 1710 aa22.86■■□□□ 1.25
CMTM1-219ENST00000533953 PBRM1Q86U86 1689 aa22.86■■□□□ 1.25
CMTM1-219ENST00000533953 SYNJ2O15056 1496 aa22.84■■□□□ 1.25
CMTM1-219ENST00000533953 KIF27Q86VH2 1401 aa22.79■■□□□ 1.24
CMTM1-219ENST00000533953 IGF1RP08069 1367 aa22.77■■□□□ 1.24
CMTM1-219ENST00000533953 FHAD1B1AJZ9 1412 aa22.75■■□□□ 1.23
CMTM1-219ENST00000533953 ERICH3Q5RHP9 1530 aa22.75■■□□□ 1.23
CMTM1-219ENST00000533953 RUSC2Q8N2Y8 1516 aa22.74■■□□□ 1.23
CMTM1-219ENST00000533953 ADAMTS12P58397 1594 aa22.73■■□□□ 1.23
CMTM1-219ENST00000533953 GRIN2AQ12879 1464 aa22.71■■□□□ 1.23
CMTM1-219ENST00000533953 CHIC1Q5VXU3 224 aa22.65■■□□□ 1.22
CMTM1-219ENST00000533953 CLASP1Q7Z460 1538 aa22.64■■□□□ 1.21
CMTM1-219ENST00000533953 ARHGEF11O15085 1522 aa22.62■■□□□ 1.21
CMTM1-219ENST00000533953 CARMIL1Q5VZK9 1371 aa22.62■■□□□ 1.21
CMTM1-219ENST00000533953 RIMBP3CA6NJZ7 1639 aa22.6■■□□□ 1.21
CMTM1-219ENST00000533953 RIMBP3BA6NNM3 1639 aa22.6■■□□□ 1.21
CMTM1-219ENST00000533953 RIMBP3Q9UFD9 1639 aa22.6■■□□□ 1.21
CMTM1-219ENST00000533953 CEP170Q5SW79 1584 aa22.6■■□□□ 1.21
CMTM1-219ENST00000533953 NUP160Q12769 1436 aa22.6■■□□□ 1.21
CMTM1-219ENST00000533953 CYB5RLQ6IPT4 315 aa22.58■■□□□ 1.21
CMTM1-219ENST00000533953 FAM9AQ8IZU1 332 aaPredicted RBP22.53■■□□□ 1.2
CMTM1-219ENST00000533953 CUL7Q14999 1698 aa22.49■■□□□ 1.19
CMTM1-219ENST00000533953 JPH4Q96JJ6 628 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms