RNA–Protein interactions for RNA: ENST00000586385.5

BRCA1-225, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 781 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-225ENST00000586385 NISCHQ9Y2I1 1504 aa30.3■■■□□ 2.44
BRCA1-225ENST00000586385 ABCC9O60706 1549 aa27.43■■□□□ 1.98
BRCA1-225ENST00000586385 CCDC180Q9P1Z9 1646 aa27.17■■□□□ 1.94
BRCA1-225ENST00000586385 DNAJC5BQ9UF47 199 aa26.01■■□□□ 1.75
BRCA1-225ENST00000586385 RB1CC1Q8TDY2 1594 aa25.95■■□□□ 1.75
BRCA1-225ENST00000586385 NACADO15069 1562 aa25.76■■□□□ 1.71
BRCA1-225ENST00000586385 DCAF8L2P0C7V8 631 aa25.57■■□□□ 1.68
BRCA1-225ENST00000586385 PABPN1Q86U42 306 aaKnown RBP eCLIP25.54■■□□□ 1.68
BRCA1-225ENST00000586385 MYO15BQ96JP2 1530 aa25.38■■□□□ 1.65
BRCA1-225ENST00000586385 UNC13AQ9UPW8 1703 aa25.37■■□□□ 1.65
BRCA1-225ENST00000586385 BICRAQ9NZM4 1560 aa25.32■■□□□ 1.64
BRCA1-225ENST00000586385 ZCCHC6Q5VYS8 1495 aaKnown RBP25.09■■□□□ 1.61
BRCA1-225ENST00000586385 DCAF1Q9Y4B6 1507 aa25■■□□□ 1.59
BRCA1-225ENST00000586385 SHROOM4Q9ULL8 1493 aa24.88■■□□□ 1.57
BRCA1-225ENST00000586385 SCRIBQ14160 1630 aa24.79■■□□□ 1.56
BRCA1-225ENST00000586385 CC2D2AQ9P2K1 1620 aa24.75■■□□□ 1.55
BRCA1-225ENST00000586385 CECR2Q9BXF3 1484 aa24.72■■□□□ 1.55
BRCA1-225ENST00000586385 EIF4G1Q04637 1599 aaKnown RBP24.66■■□□□ 1.54
BRCA1-225ENST00000586385 DNAJC5Q9H3Z4 198 aa23.93■■□□□ 1.42
BRCA1-225ENST00000586385 NCAPD3P42695 1498 aa23.85■■□□□ 1.41
BRCA1-225ENST00000586385 ATAD2BQ9ULI0 1458 aa23.75■■□□□ 1.39
BRCA1-225ENST00000586385 CUX2O14529 1486 aa23.68■■□□□ 1.38
BRCA1-225ENST00000586385 SMARCA4P51532 1647 aa23.64■■□□□ 1.38
BRCA1-225ENST00000586385 ERCC6Q03468 1493 aa23.62■■□□□ 1.37
BRCA1-225ENST00000586385 HMGXB3Q12766 1538 aa23.61■■□□□ 1.37
BRCA1-225ENST00000586385 SMARCA2P51531 1590 aa23.61■■□□□ 1.37
BRCA1-225ENST00000586385 NESP48681 1621 aa23.55■■□□□ 1.36
BRCA1-225ENST00000586385 BAZ1AQ9NRL2 1556 aaPredicted RBP23.48■■□□□ 1.35
BRCA1-225ENST00000586385 BAZ1BQ9UIG0 1483 aaKnown RBP23.46■■□□□ 1.35
BRCA1-225ENST00000586385 PEG3Q9GZU2 1588 aa23.44■■□□□ 1.34
BRCA1-225ENST00000586385 MROH2BQ7Z745 1585 aa23.38■■□□□ 1.33
BRCA1-225ENST00000586385 THOC2Q8NI27 1593 aaKnown RBP23.31■■□□□ 1.32
BRCA1-225ENST00000586385 LAMC3Q9Y6N6 1575 aa23.27■■□□□ 1.32
BRCA1-225ENST00000586385 KIF21AQ7Z4S6 1674 aa23.15■■□□□ 1.3
BRCA1-225ENST00000586385 PDS5BQ9NTI5 1447 aa23.15■■□□□ 1.3
BRCA1-225ENST00000586385 CADPSQ9ULU8 1353 aa23.11■■□□□ 1.29
BRCA1-225ENST00000586385 WIZO95785 1651 aa23.03■■□□□ 1.28
BRCA1-225ENST00000586385 MRC2Q9UBG0 1479 aa22.98■■□□□ 1.27
BRCA1-225ENST00000586385 WDR62O43379 1518 aa22.94■■□□□ 1.26
BRCA1-225ENST00000586385 CEP164Q9UPV0 1460 aa22.84■■□□□ 1.25
BRCA1-225ENST00000586385 RSF1Q96T23 1441 aaPredicted RBP22.83■■□□□ 1.25
BRCA1-225ENST00000586385 FANCD2Q9BXW9 1451 aa22.83■■□□□ 1.25
BRCA1-225ENST00000586385 CFTRP13569 1480 aa22.81■■□□□ 1.24
BRCA1-225ENST00000586385 TRIM41Q8WV44 630 aa22.75■■□□□ 1.23
BRCA1-225ENST00000586385 TOP2AP11388 1531 aaKnown RBP22.72■■□□□ 1.23
BRCA1-225ENST00000586385 URB2Q14146 1524 aaKnown RBP22.7■■□□□ 1.22
BRCA1-225ENST00000586385 OSCARQ8IYS5 282 aa22.57■■□□□ 1.2
BRCA1-225ENST00000586385 CCDC88BA6NC98 1476 aa22.51■■□□□ 1.19
BRCA1-225ENST00000586385 ZNF608Q9ULD9 1512 aaPredicted RBP22.46■■□□□ 1.19
BRCA1-225ENST00000586385 PRDM2Q13029 1718 aa22.41■■□□□ 1.18
BRCA1-225ENST00000586385 IFT140Q96RY7 1462 aa22.41■■□□□ 1.18
BRCA1-225ENST00000586385 TOPBP1Q92547 1522 aa22.39■■□□□ 1.17
BRCA1-225ENST00000586385 RIMBP3CA6NJZ7 1639 aa22.3■■□□□ 1.16
BRCA1-225ENST00000586385 RIMBP3BA6NNM3 1639 aa22.3■■□□□ 1.16
BRCA1-225ENST00000586385 RIMBP3Q9UFD9 1639 aa22.3■■□□□ 1.16
BRCA1-225ENST00000586385 DNMBPQ6XZF7 1577 aa22.25■■□□□ 1.15
BRCA1-225ENST00000586385 EIF4G3O43432 1585 aaKnown RBP22.25■■□□□ 1.15
BRCA1-225ENST00000586385 ABCC8Q09428 1581 aa22.25■■□□□ 1.15
BRCA1-225ENST00000586385 ARHGEF11O15085 1522 aa22.23■■□□□ 1.15
BRCA1-225ENST00000586385 AQRO60306 1485 aaKnown RBP eCLIP22.21■■□□□ 1.154e-10■■■■■ 36.9
BRCA1-225ENST00000586385 TARBP1Q13395 1621 aaKnown RBP22.2■■□□□ 1.14
BRCA1-225ENST00000586385 POLA1P09884 1462 aaPredicted RBP22.15■■□□□ 1.14
BRCA1-225ENST00000586385 RAD54L2Q9Y4B4 1467 aa22.09■■□□□ 1.13
BRCA1-225ENST00000586385 CHD1O14646 1710 aa22.07■■□□□ 1.12
BRCA1-225ENST00000586385 CYB5RLQ6IPT4 315 aa22.07■■□□□ 1.12
BRCA1-225ENST00000586385 ARAP1Q96P48 1450 aa22.04■■□□□ 1.12
BRCA1-225ENST00000586385 TDRD9Q8NDG6 1382 aaKnown RBP22.04■■□□□ 1.12
BRCA1-225ENST00000586385 SOGA1O94964 1423 aa22.03■■□□□ 1.12
BRCA1-225ENST00000586385 FBLN2P98095 1184 aa22.02■■□□□ 1.12
BRCA1-225ENST00000586385 FGD5Q6ZNL6 1462 aa21.98■■□□□ 1.11
BRCA1-225ENST00000586385 CUX1P39880 1505 aa21.96■■□□□ 1.11
BRCA1-225ENST00000586385 SNAPC4Q5SXM2 1469 aa21.96■■□□□ 1.11
BRCA1-225ENST00000586385 CLASP1Q7Z460 1538 aa21.9■■□□□ 1.1
BRCA1-225ENST00000586385 WDR97A6NE52 1622 aa21.88■■□□□ 1.09
BRCA1-225ENST00000586385 MAGI1Q96QZ7 1491 aaPredicted RBP21.86■■□□□ 1.09
BRCA1-225ENST00000586385 GRIN2BQ13224 1484 aa21.84■■□□□ 1.09
BRCA1-225ENST00000586385 CHMP7Q8WUX9 453 aaPredicted RBP21.83■■□□□ 1.09
BRCA1-225ENST00000586385 TRHP20396 242 aaPredicted RBP21.82■■□□□ 1.08
BRCA1-225ENST00000586385 SYNJ2O15056 1496 aa21.8■■□□□ 1.08
BRCA1-225ENST00000586385 SYNJ1O43426 1573 aa21.78■■□□□ 1.08
BRCA1-225ENST00000586385 GAPVD1Q14C86 1478 aa21.75■■□□□ 1.07
BRCA1-225ENST00000586385 ABCA10Q8WWZ4 1543 aa21.72■■□□□ 1.07
BRCA1-225ENST00000586385 ABCA5Q8WWZ7 1642 aa21.69■■□□□ 1.06
BRCA1-225ENST00000586385 PBRM1Q86U86 1689 aa21.68■■□□□ 1.06
BRCA1-225ENST00000586385 SUPT5HO00267 1087 aaKnown RBP21.62■■□□□ 1.05
BRCA1-225ENST00000586385 ERCC6L2Q5T890 1561 aa21.58■■□□□ 1.05
BRCA1-225ENST00000586385 GRIN2AQ12879 1464 aa21.58■■□□□ 1.04
BRCA1-225ENST00000586385 WRNQ14191 1432 aaPredicted RBP eCLIP21.56■■□□□ 1.041e-6■■■■■ 58.5
BRCA1-225ENST00000586385 NUP160Q12769 1436 aa21.55■■□□□ 1.04
BRCA1-225ENST00000586385 ADAMTS12P58397 1594 aa21.54■■□□□ 1.04
BRCA1-225ENST00000586385 CEP170Q5SW79 1584 aa21.53■■□□□ 1.04
BRCA1-225ENST00000586385 TOP2BQ02880 1626 aa21.5■■□□□ 1.03
BRCA1-225ENST00000586385 BIVM-ERCC5R4GMW8 1640 aa21.49■■□□□ 1.03
BRCA1-225ENST00000586385 FHAD1B1AJZ9 1412 aa21.47■■□□□ 1.03
BRCA1-225ENST00000586385 SHROOM2Q13796 1616 aa21.44■■□□□ 1.02
BRCA1-225ENST00000586385 ERICH3Q5RHP9 1530 aa21.41■■□□□ 1.02
BRCA1-225ENST00000586385 PRG4Q92954 1404 aaPredicted RBP21.32■■□□□ 1
BRCA1-225ENST00000586385 JPH4Q96JJ6 628 aa21.3■■□□□ 1
BRCA1-225ENST00000586385 AEBP2Q6ZN18 517 aaPredicted RBP21.26■□□□□ 0.99
BRCA1-225ENST00000586385 RUSC2Q8N2Y8 1516 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms